Analysis of interatomic Contacts of Structural Units in PDB entry:
9NR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NR9 entry

There are 6 chains in PDB entry 9NR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASP 5	LEU 208
H	ARG 6	LEU 208
A	ARG 389	ARG 815
B	VAL 397	SER 820
C	ARG 389	ARG 815
D	VAL 397	LYS 819

There are 68 helices in PDB entry 9NR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	6	29	Right-handed alpha
Helix 2	AA2	F	95	105	Right-handed alpha
Helix 3	AA3	F	105	128	Right-handed alpha
Helix 4	AA4	F	132	161	Right-handed alpha
Helix 5	AA5	F	177	207	Right-handed alpha
Helix 6	AA6	H	7	28	Right-handed alpha
Helix 7	AA7	H	94	105	Right-handed alpha
Helix 8	AA8	H	105	128	Right-handed alpha
Helix 9	AA9	H	133	162	Right-handed alpha
Helix 10	AB1	H	178	208	Right-handed alpha
Helix 11	AB2	A	407	411	Right-handed 310
Helix 12	AB3	A	419	433	Right-handed alpha
Helix 13	AB4	A	457	465	Right-handed alpha
Helix 14	AB5	A	478	485	Right-handed alpha
Helix 15	AB6	A	509	513	Right-handed 310
Helix 16	AB7	A	514	518	Right-handed 310
Helix 17	AB8	A	519	543	Right-handed alpha
Helix 18	AB9	A	591	626	Right-handed alpha
Helix 19	AC1	A	632	638	Right-handed alpha
Helix 20	AC2	A	649	657	Right-handed alpha
Helix 21	AC3	A	660	672	Right-handed alpha
Helix 22	AC4	A	681	693	Right-handed alpha
Helix 23	AC5	A	701	710	Right-handed alpha
Helix 24	AC6	A	739	753	Right-handed alpha
Helix 25	AC7	A	753	764	Right-handed alpha
Helix 26	AC8	A	788	815	Right-handed alpha
Helix 27	AC9	B	426	439	Right-handed alpha
Helix 28	AD1	B	463	472	Right-handed alpha
Helix 29	AD2	B	515	521	Right-handed alpha
Helix 30	AD3	B	525	549	Right-handed alpha
Helix 31	AD4	B	597	628	Right-handed alpha
Helix 32	AD5	B	637	645	Right-handed alpha
Helix 33	AD6	B	655	663	Right-handed alpha
Helix 34	AD7	B	666	678	Right-handed alpha
Helix 35	AD8	B	687	698	Right-handed alpha
Helix 36	AD9	B	708	716	Right-handed alpha
Helix 37	AE1	B	744	758	Right-handed alpha
Helix 38	AE2	B	760	772	Right-handed alpha
Helix 39	AE3	B	794	820	Right-handed alpha
Helix 40	AE4	C	407	411	Right-handed 310
Helix 41	AE5	C	419	433	Right-handed alpha
Helix 42	AE6	C	457	465	Right-handed alpha
Helix 43	AE7	C	478	483	Right-handed alpha
Helix 44	AE8	C	509	514	Right-handed alpha
Helix 45	AE9	C	518	543	Right-handed alpha
Helix 46	AF1	C	593	625	Right-handed alpha
Helix 47	AF2	C	632	639	Right-handed alpha
Helix 48	AF3	C	649	657	Right-handed alpha
Helix 49	AF4	C	660	673	Right-handed alpha
Helix 50	AF5	C	681	692	Right-handed alpha
Helix 51	AF6	C	702	712	Right-handed alpha
Helix 52	AF7	C	739	753	Right-handed alpha
Helix 53	AF8	C	753	765	Right-handed alpha
Helix 54	AF9	C	788	815	Right-handed alpha
Helix 55	AG1	D	419	421	Right-handed 310
Helix 56	AG2	D	426	439	Right-handed alpha
Helix 57	AG3	D	463	471	Right-handed alpha
Helix 58	AG4	D	516	521	Right-handed alpha
Helix 59	AG5	D	524	547	Right-handed alpha
Helix 60	AG6	D	597	629	Right-handed alpha
Helix 61	AG7	D	638	644	Right-handed alpha
Helix 62	AG8	D	655	663	Right-handed alpha
Helix 63	AG9	D	668	678	Right-handed alpha
Helix 64	AH1	D	687	696	Right-handed alpha
Helix 65	AH2	D	708	715	Right-handed alpha
Helix 66	AH3	D	744	759	Right-handed alpha
Helix 67	AH4	D	760	770	Right-handed alpha
Helix 68	AH5	D	794	819	Right-handed alpha

There are 15 sheets in PDB entry 9NR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	57	61	anti-parallel
Strand 3	F	67	68	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	78	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	59	61	anti-parallel
Strand 4	H	34	36	anti-parallel
Strand 5	H	175	176	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	437	440	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	731	732	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	501	first strand
Strand 2	A	716	719	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	476	477	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	424	425	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	505	first strand
Strand 2	B	703	707	anti-parallel
Strand 3	B	649	650	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	394	first strand
Strand 2	C	436	439	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	731	732	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	696	701	anti-parallel
Strand 3	C	642	644	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	399	401	parallel
Strand 3	D	476	477	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	410	first strand
Strand 2	D	423	425	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	493	first strand
Strand 2	D	737	738	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	684	685	first strand
Strand 2	D	649	652	parallel
Strand 3	D	703	707	parallel
Strand 4	D	498	505	anti-parallel
Strand 5	D	728	734	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NR9