Analysis of interatomic Contacts of Structural Units in PDB entry:
9NRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NRY entry

There are 9 chains in PDB entry 9NRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TYR 1	PHE 398
G	TYR 1	PHE 398
J	SER 1	THR 343
N	THR 2	THR 343
O	TYR 1	PHE 398
Q	SER 1	THR 343
X	ASP 1	SER 113
Y	ASP 1	SER 113
Z	ASP 1	SER 113

There are 26 helices in PDB entry 9NRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	112	116	Right-handed 310
Helix 2	AA2	B	238	247	Right-handed alpha
Helix 3	AA3	B	250	254	Right-handed 310
Helix 4	AA4	B	255	259	Right-handed 310
Helix 5	AA5	B	283	287	Right-handed 310
Helix 6	AA6	G	112	115	Right-handed 310
Helix 7	AA7	G	238	247	Right-handed alpha
Helix 8	AA8	G	250	254	Right-handed 310
Helix 9	AA9	G	283	287	Right-handed 310
Helix 10	AB1	G	289	293	Right-handed 310
Helix 11	AB2	J	6	12	Right-handed 310
Helix 12	AB3	J	80	82	Right-handed 310
Helix 13	AB4	J	222	224	Right-handed 310
Helix 14	AB5	N	6	11	Right-handed alpha
Helix 15	AB6	O	238	246	Right-handed alpha
Helix 16	AB7	O	250	254	Right-handed 310
Helix 17	AB8	O	283	287	Right-handed 310
Helix 18	AB9	O	289	293	Right-handed 310
Helix 19	AC1	Q	2	8	Right-handed alpha
Helix 20	AC2	Q	9	12	Right-handed 310
Helix 21	AC3	Q	222	224	Right-handed 310
Helix 22	AC4	X	83	87	Right-handed 310
Helix 23	AC5	Y	83	87	Right-handed 310
Helix 24	AC6	Z	28	32	Right-handed 310
Helix 25	AC7	Z	61	64	Right-handed 310
Helix 26	AC8	Z	83	87	Right-handed 310

There are 70 sheets in PDB entry 9NRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3, AH4, AH5, AH6, AH7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	8	first strand
Strand 2	B	275	281	anti-parallel
Strand 3	B	159	163	anti-parallel
Strand 4	B	154	156	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	27	48	anti-parallel
Strand 3	B	119	137	anti-parallel
Strand 4	B	176	180	anti-parallel
Strand 5	B	183	185	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	147	first strand
Strand 2	B	119	137	anti-parallel
Strand 3	B	27	48	anti-parallel
Strand 4	B	267	269	anti-parallel
Strand 5	B	260	262	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	109	110	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	77	82	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	213	215	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	233	234	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	305	first strand
Strand 2	B	314	322	anti-parallel
Strand 3	B	351	358	anti-parallel
Strand 4	B	337	339	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	328	331	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	372	377	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	Q	336	340	anti-parallel
Strand 3	Q	326	330	anti-parallel
Strand 4	Q	293	298	anti-parallel
Strand 5	Q	307	311	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	8	first strand
Strand 2	G	275	281	anti-parallel
Strand 3	G	159	163	anti-parallel
Strand 4	G	154	156	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	19	first strand
Strand 2	G	27	48	anti-parallel
Strand 3	G	119	136	anti-parallel
Strand 4	G	176	180	anti-parallel
Strand 5	G	183	185	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	147	first strand
Strand 2	G	119	136	anti-parallel
Strand 3	G	27	48	anti-parallel
Strand 4	G	267	269	anti-parallel
Strand 5	G	260	262	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	55	first strand
Strand 2	G	101	110	anti-parallel
Strand 3	G	59	61	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	55	first strand
Strand 2	G	101	110	anti-parallel
Strand 3	G	77	81	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	203	204	first strand
Strand 2	G	214	215	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	296	305	first strand
Strand 2	G	314	322	anti-parallel
Strand 3	G	351	358	anti-parallel
Strand 4	G	337	339	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	326	329	first strand
Strand 2	G	343	346	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	364	368	first strand
Strand 2	G	373	377	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	387	388	first strand
Strand 2	J	339	340	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	19	first strand
Strand 2	J	27	29	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	37	first strand
Strand 2	J	44	49	anti-parallel
Strand 3	J	99	103	anti-parallel
Strand 4	J	91	96	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	53	first strand
Strand 2	J	65	70	anti-parallel
Strand 3	J	73	78	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	83	85	first strand
Strand 2	J	110	115	anti-parallel
Strand 3	J	120	125	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	147	154	first strand
Strand 2	J	261	268	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	164	165	first strand
Strand 2	J	255	256	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	167	168	first strand
Strand 2	J	237	238	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	173	174	first strand
Strand 2	J	226	230	anti-parallel
Strand 3	J	195	200	anti-parallel
Strand 4	J	206	211	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	179	181	first strand
Strand 2	J	186	188	anti-parallel
Strand 3	J	215	217	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	275	279	first strand
Strand 2	J	282	286	anti-parallel
Strand 3	J	316	320	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	307	311	first strand
Strand 2	J	293	298	anti-parallel
Strand 3	J	327	330	anti-parallel
Strand 4	J	336	337	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	44	53	anti-parallel
Strand 3	N	65	70	anti-parallel
Strand 4	N	73	78	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	44	53	anti-parallel
Strand 3	N	91	103	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	82	85	first strand
Strand 2	N	110	114	anti-parallel
Strand 3	N	121	125	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	147	154	first strand
Strand 2	N	261	268	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	237	238	first strand
Strand 2	N	164	168	anti-parallel
Strand 3	N	254	256	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	179	181	first strand
Strand 2	N	186	188	anti-parallel
Strand 3	N	215	217	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	206	211	first strand
Strand 2	N	195	200	anti-parallel
Strand 3	N	227	231	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	275	279	first strand
Strand 2	N	282	286	anti-parallel
Strand 3	N	316	320	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	307	311	first strand
Strand 2	N	293	298	anti-parallel
Strand 3	N	326	330	anti-parallel
Strand 4	N	336	340	anti-parallel
Strand 5	O	387	388	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	2	8	first strand
Strand 2	O	275	281	anti-parallel
Strand 3	O	159	163	anti-parallel
Strand 4	O	154	156	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	15	19	first strand
Strand 2	O	27	38	anti-parallel
Strand 3	O	130	137	anti-parallel
Strand 4	O	141	147	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	15	19	first strand
Strand 2	O	27	38	anti-parallel
Strand 3	O	267	269	anti-parallel
Strand 4	O	260	262	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	44	48	first strand
Strand 2	O	119	123	anti-parallel
Strand 3	O	176	180	anti-parallel
Strand 4	O	183	185	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	51	55	first strand
Strand 2	O	101	110	anti-parallel
Strand 3	O	59	61	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	51	55	first strand
Strand 2	O	101	110	anti-parallel
Strand 3	O	77	81	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	87	88	first strand
Strand 2	O	91	92	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	203	205	first strand
Strand 2	O	213	215	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	220	221	first strand
Strand 2	O	233	234	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	296	306	first strand
Strand 2	O	314	322	anti-parallel
Strand 3	O	349	358	anti-parallel
Strand 4	O	337	339	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	326	328	first strand
Strand 2	O	344	346	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	364	369	first strand
Strand 2	O	372	377	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	17	19	first strand
Strand 2	Q	27	29	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	33	37	first strand
Strand 2	Q	44	53	anti-parallel
Strand 3	Q	65	70	anti-parallel
Strand 4	Q	73	78	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	33	37	first strand
Strand 2	Q	44	53	anti-parallel
Strand 3	Q	91	103	anti-parallel

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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	82	85	first strand
Strand 2	Q	110	115	anti-parallel
Strand 3	Q	120	125	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	147	154	first strand
Strand 2	Q	261	268	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	237	238	first strand
Strand 2	Q	164	168	anti-parallel
Strand 3	Q	253	256	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	179	181	first strand
Strand 2	Q	186	188	anti-parallel
Strand 3	Q	215	217	anti-parallel

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There are 3 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	206	208	first strand
Strand 2	Q	196	200	anti-parallel
Strand 3	Q	226	230	anti-parallel

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There are 3 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	275	279	first strand
Strand 2	Q	282	287	anti-parallel
Strand 3	Q	315	319	anti-parallel

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There are 4 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	17	24	anti-parallel
Strand 3	X	77	82	anti-parallel
Strand 4	X	68	72	anti-parallel

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There are 6 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	11	13	first strand
Strand 2	X	107	112	parallel
Strand 3	X	88	95	anti-parallel
Strand 4	X	33	39	anti-parallel
Strand 5	X	46	52	anti-parallel
Strand 6	X	56	59	anti-parallel

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There are 4 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	11	13	first strand
Strand 2	X	107	112	parallel
Strand 3	X	88	95	anti-parallel
Strand 4	X	102	103	anti-parallel

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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	7	first strand
Strand 2	Y	18	24	anti-parallel
Strand 3	Y	77	82	anti-parallel
Strand 4	Y	68	72	anti-parallel

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There are 6 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	11	13	first strand
Strand 2	Y	107	112	parallel
Strand 3	Y	88	95	anti-parallel
Strand 4	Y	33	39	anti-parallel
Strand 5	Y	46	51	anti-parallel
Strand 6	Y	57	59	anti-parallel

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There are 4 strands in AH4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	11	13	first strand
Strand 2	Y	107	112	parallel
Strand 3	Y	88	95	anti-parallel
Strand 4	Y	102	103	anti-parallel

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There are 4 strands in AH5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	4	7	first strand
Strand 2	Z	18	24	anti-parallel
Strand 3	Z	77	82	anti-parallel
Strand 4	Z	67	72	anti-parallel

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There are 6 strands in AH6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	11	13	first strand
Strand 2	Z	107	112	parallel
Strand 3	Z	88	95	anti-parallel
Strand 4	Z	33	39	anti-parallel
Strand 5	Z	46	52	anti-parallel
Strand 6	Z	56	59	anti-parallel

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There are 4 strands in AH7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	11	13	first strand
Strand 2	Z	107	112	parallel
Strand 3	Z	88	95	anti-parallel
Strand 4	Z	101	103	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 9NRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NRY