Analysis of interatomic Contacts of Structural Units in PDB entry:
9NT6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NT6 entry

There are 2 chains in PDB entry 9NT6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 61ASN 331
B
 LYS 59GLN 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9NT6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 91Right-handed alpha
Helix 2
AA2
A
102 116Right-handed alpha
Helix 3
AA3
A
129 140Right-handed alpha
Helix 4
AA4
A
162 175Right-handed alpha
Helix 5
AA5
A
189 206Right-handed alpha
Helix 6
AA6
A
219 234Right-handed alpha
Helix 7
AA7
A
243 257Right-handed alpha
Helix 8
AA8
A
273 279Right-handed 310
Helix 9
AA9
A
289 307Right-handed alpha
Helix 10
AB1
B
73 90Right-handed alpha
Helix 11
AB2
B
102 116Right-handed alpha
Helix 12
AB3
B
128 139Right-handed alpha
Helix 13
AB4
B
160 176Right-handed alpha
Helix 14
AB5
B
189 206Right-handed alpha
Helix 15
AB6
B
219 234Right-handed alpha
Helix 16
AB7
B
243 257Right-handed alpha
Helix 17
AB8
B
273 279Right-handed 310
Helix 18
AB9
B
289 307Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9NT6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
63 68parallel
Strand 3
A
120 124parallel
Strand 4
A
144 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
149 150parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
314 316parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
180 184parallel
Strand 3
A
238 241parallel
Strand 4
A
266 271parallel
Strand 5
A
285 287parallel
Strand 6
A
319 321anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 98first strand
Strand 2
B
63 68parallel
Strand 3
B
120 124parallel
Strand 4
B
144 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
313 316parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 215first strand
Strand 2
B
180 184parallel
Strand 3
B
238 241parallel
Strand 4
B
266 271parallel
Strand 5
B
285 287parallel
Strand 6
B
319 321anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il