Analysis of interatomic Contacts of Structural Units in PDB entry:
9NTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NTJ entry

There are 2 chains in PDB entry 9NTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 28HIS 521
B
 LEU 28HIS 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9NTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 47Right-handed alpha
Helix 2
AA2
A
57 81Right-handed alpha
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
101 110Right-handed alpha
Helix 6
AA6
A
121 123Right-handed 310
Helix 7
AA7
A
125 132Right-handed alpha
Helix 8
AA8
A
133 136Right-handed 310
Helix 9
AA9
A
169 177Right-handed alpha
Helix 10
AB1
A
178 189Right-handed alpha
Helix 11
AB2
A
196 201Right-handed alpha
Helix 12
AB3
A
203 223Right-handed alpha
Helix 13
AB4
A
224 242Right-handed alpha
Helix 14
AB5
A
265 284Right-handed alpha
Helix 15
AB6
A
301 319Right-handed alpha
Helix 16
AB7
A
338 340Right-handed 310
Helix 17
AB8
A
341 347Right-handed alpha
Helix 18
AB9
A
375 383Right-handed alpha
Helix 19
AC1
A
397 408Right-handed alpha
Helix 20
AC2
A
414 421Right-handed alpha
Helix 21
AC3
A
426 430Right-handed 310
Helix 22
AC4
A
432 438Right-handed alpha
Helix 23
AC5
A
449 453Right-handed 310
Helix 24
AC6
A
457 468Right-handed alpha
Helix 25
AC7
A
474 488Right-handed alpha
Helix 26
AC8
A
492 519Right-handed alpha
Helix 27
AC9
B
29 47Right-handed alpha
Helix 28
AD1
B
57 81Right-handed alpha
Helix 29
AD2
B
85 89Right-handed 310
Helix 30
AD3
B
90 100Right-handed alpha
Helix 31
AD4
B
101 110Right-handed alpha
Helix 32
AD5
B
121 123Right-handed 310
Helix 33
AD6
B
125 132Right-handed alpha
Helix 34
AD7
B
133 136Right-handed 310
Helix 35
AD8
B
169 177Right-handed alpha
Helix 36
AD9
B
178 191Right-handed alpha
Helix 37
AE1
B
196 201Right-handed alpha
Helix 38
AE2
B
203 223Right-handed alpha
Helix 39
AE3
B
224 242Right-handed alpha
Helix 40
AE4
B
265 284Right-handed alpha
Helix 41
AE5
B
301 319Right-handed alpha
Helix 42
AE6
B
338 340Right-handed 310
Helix 43
AE7
B
341 347Right-handed alpha
Helix 44
AE8
B
371 383Right-handed alpha
Helix 45
AE9
B
397 408Right-handed alpha
Helix 46
AF1
B
414 421Right-handed alpha
Helix 47
AF2
B
426 430Right-handed 310
Helix 48
AF3
B
432 438Right-handed alpha
Helix 49
AF4
B
449 453Right-handed 310
Helix 50
AF5
B
457 468Right-handed alpha
Helix 51
AF6
B
474 488Right-handed alpha
Helix 52
AF7
B
492 519Right-handed alpha
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There are 6 sheets in PDB entry 9NTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 119first strand
Strand 2
A
244 251parallel
Strand 3
A
289 297parallel
Strand 4
A
323 329parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
139 143anti-parallel
Strand 3
A
167 168anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
387 390parallel
Strand 3
A
410 413parallel
Strand 4
A
442 444parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 119first strand
Strand 2
B
244 251parallel
Strand 3
B
289 297parallel
Strand 4
B
323 329parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 153first strand
Strand 2
B
139 143anti-parallel
Strand 3
B
167 168anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 363first strand
Strand 2
B
387 390parallel
Strand 3
B
410 413parallel
Strand 4
B
442 444parallel
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