Analysis of interatomic Contacts of Structural Units in PDB entry:
9NTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NTQ entry

There are 2 chains in PDB entry 9NTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 35SER 477
B
 ASP 1SER 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9NTQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 114Right-handed alpha
Helix 2
AA2
A
115 134Right-handed alpha
Helix 3
AA3
A
135 138Right-handed 310
Helix 4
AA4
A
139 157Right-handed alpha
Helix 5
AA5
A
162 182Right-handed alpha
Helix 6
AA6
A
194 205Right-handed alpha
Helix 7
AA7
A
210 227Right-handed alpha
Helix 8
AA8
A
231 244Right-handed alpha
Helix 9
AA9
A
249 261Right-handed alpha
Helix 10
AB1
A
261 266Right-handed alpha
Helix 11
AB2
A
274 286Right-handed alpha
Helix 12
AB3
A
286 291Right-handed alpha
Helix 13
AB4
A
291 298Right-handed alpha
Helix 14
AB5
A
301 307Right-handed alpha
Helix 15
AB6
A
316 322Right-handed alpha
Helix 16
AB7
A
322 329Right-handed alpha
Helix 17
AB8
A
332 336Right-handed alpha
Helix 18
AB9
A
337 349Right-handed alpha
Helix 19
AC1
A
384 397Right-handed alpha
Helix 20
AC2
A
404 412Right-handed alpha
Helix 21
AC3
A
457 466Right-handed alpha
Helix 22
AC4
A
468 470Right-handed 310
Helix 23
AC5
B
26 27Right-handed 310
Helix 24
AC6
B
29 31Right-handed 310
Helix 25
AC7
B
32 36Right-handed 310
Helix 26
AC8
B
69 72Right-handed 310
Helix 27
AC9
B
94 98Right-handed 310
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There are 3 sheets in PDB entry 9NTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
428 431anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
75 80anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
113 117parallel
Strand 3
B
99 105anti-parallel
Strand 4
B
38 43anti-parallel
Strand 5
B
50 55anti-parallel
Strand 6
B
65 67anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il