Analysis of interatomic Contacts of Structural Units in PDB entry:
9NUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NUD entry

There are 6 chains in PDB entry 9NUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 239	ALA 758
B	LEU 239	ALA 758
C	LEU 239	ALA 758
D	LEU 239	ALA 758
E	LEU 239	ALA 758
F	LYS 246	ALA 758

There are176 helices in PDB entry 9NUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	244	256	Right-handed alpha
Helix 2	AA2	A	262	270	Right-handed alpha
Helix 3	AA3	A	286	298	Right-handed alpha
Helix 4	AA4	A	308	314	Right-handed alpha
Helix 5	AA5	A	315	322	Right-handed alpha
Helix 6	AA6	A	323	326	Right-handed 310
Helix 7	AA7	A	327	338	Right-handed alpha
Helix 8	AA8	A	339	341	Right-handed 310
Helix 9	AA9	A	350	355	Right-handed 310
Helix 10	AB1	A	369	381	Right-handed alpha
Helix 11	AB2	A	396	400	Right-handed 310
Helix 12	AB3	A	401	405	Right-handed 310
Helix 13	AB4	A	420	432	Right-handed alpha
Helix 14	AB5	A	432	437	Right-handed alpha
Helix 15	AB6	A	446	454	Right-handed alpha
Helix 16	AB7	A	458	476	Right-handed alpha
Helix 17	AB8	A	500	509	Right-handed alpha
Helix 18	AB9	A	516	525	Right-handed alpha
Helix 19	AC1	A	532	552	Right-handed alpha
Helix 20	AC2	A	569	580	Right-handed alpha
Helix 21	AC3	A	598	614	Right-handed alpha
Helix 22	AC4	A	625	630	Right-handed alpha
Helix 23	AC5	A	640	651	Right-handed alpha
Helix 24	AC6	A	669	677	Right-handed alpha
Helix 25	AC7	A	693	704	Right-handed alpha
Helix 26	AC8	A	708	723	Right-handed alpha
Helix 27	AC9	A	729	742	Right-handed alpha
Helix 28	AD1	A	745	758	Right-handed alpha
Helix 29	AD2	B	244	256	Right-handed alpha
Helix 30	AD3	B	256	261	Right-handed alpha
Helix 31	AD4	B	262	270	Right-handed alpha
Helix 32	AD5	B	286	298	Right-handed alpha
Helix 33	AD6	B	308	313	Right-handed alpha
Helix 34	AD7	B	315	338	Right-handed alpha
Helix 35	AD8	B	339	341	Right-handed 310
Helix 36	AD9	B	350	356	Right-handed 310
Helix 37	AE1	B	369	378	Right-handed alpha
Helix 38	AE2	B	401	405	Right-handed 310
Helix 39	AE3	B	420	437	Right-handed alpha
Helix 40	AE4	B	446	454	Right-handed alpha
Helix 41	AE5	B	458	476	Right-handed alpha
Helix 42	AE6	B	498	505	Right-handed alpha
Helix 43	AE7	B	506	508	Right-handed 310
Helix 44	AE8	B	516	522	Right-handed alpha
Helix 45	AE9	B	532	552	Right-handed alpha
Helix 46	AF1	B	569	580	Right-handed alpha
Helix 47	AF2	B	598	614	Right-handed alpha
Helix 48	AF3	B	625	630	Right-handed alpha
Helix 49	AF4	B	640	651	Right-handed alpha
Helix 50	AF5	B	669	674	Right-handed alpha
Helix 51	AF6	B	693	704	Right-handed alpha
Helix 52	AF7	B	708	723	Right-handed alpha
Helix 53	AF8	B	729	741	Right-handed alpha
Helix 54	AF9	B	745	758	Right-handed alpha
Helix 55	AG1	C	244	256	Right-handed alpha
Helix 56	AG2	C	256	261	Right-handed alpha
Helix 57	AG3	C	262	270	Right-handed alpha
Helix 58	AG4	C	286	299	Right-handed alpha
Helix 59	AG5	C	308	314	Right-handed alpha
Helix 60	AG6	C	315	338	Right-handed alpha
Helix 61	AG7	C	339	341	Right-handed 310
Helix 62	AG8	C	350	356	Right-handed 310
Helix 63	AG9	C	369	380	Right-handed alpha
Helix 64	AH1	C	401	405	Right-handed 310
Helix 65	AH2	C	420	437	Right-handed alpha
Helix 66	AH3	C	446	454	Right-handed alpha
Helix 67	AH4	C	458	478	Right-handed alpha
Helix 68	AH5	C	491	495	Right-handed 310
Helix 69	AH6	C	500	505	Right-handed alpha
Helix 70	AH7	C	506	508	Right-handed 310
Helix 71	AH8	C	516	522	Right-handed alpha
Helix 72	AH9	C	532	552	Right-handed alpha
Helix 73	AI1	C	569	580	Right-handed alpha
Helix 74	AI2	C	590	595	Right-handed alpha
Helix 75	AI3	C	598	614	Right-handed alpha
Helix 76	AI4	C	625	630	Right-handed alpha
Helix 77	AI5	C	640	651	Right-handed alpha
Helix 78	AI6	C	669	676	Right-handed alpha
Helix 79	AI7	C	677	681	Right-handed 310
Helix 80	AI8	C	693	704	Right-handed alpha
Helix 81	AI9	C	708	721	Right-handed alpha
Helix 82	AJ1	C	729	741	Right-handed alpha
Helix 83	AJ2	C	745	758	Right-handed alpha
Helix 84	AJ3	D	244	256	Right-handed alpha
Helix 85	AJ4	D	256	261	Right-handed alpha
Helix 86	AJ5	D	262	270	Right-handed alpha
Helix 87	AJ6	D	286	298	Right-handed alpha
Helix 88	AJ7	D	308	313	Right-handed alpha
Helix 89	AJ8	D	315	327	Right-handed alpha
Helix 90	AJ9	D	327	338	Right-handed alpha
Helix 91	AK1	D	339	341	Right-handed 310
Helix 92	AK2	D	351	356	Right-handed alpha
Helix 93	AK3	D	369	381	Right-handed alpha
Helix 94	AK4	D	396	400	Right-handed 310
Helix 95	AK5	D	401	405	Right-handed 310
Helix 96	AK6	D	420	432	Right-handed alpha
Helix 97	AK7	D	432	438	Right-handed alpha
Helix 98	AK8	D	446	454	Right-handed alpha
Helix 99	AK9	D	458	476	Right-handed alpha
Helix 100	AL1	D	491	495	Right-handed 310
Helix 101	AL2	D	498	509	Right-handed alpha
Helix 102	AL3	D	516	525	Right-handed alpha
Helix 103	AL4	D	532	552	Right-handed alpha
Helix 104	AL5	D	569	579	Right-handed alpha
Helix 105	AL6	D	590	595	Right-handed alpha
Helix 106	AL7	D	598	613	Right-handed alpha
Helix 107	AL8	D	614	616	Right-handed 310
Helix 108	AL9	D	625	630	Right-handed alpha
Helix 109	AM1	D	640	651	Right-handed alpha
Helix 110	AM2	D	669	677	Right-handed alpha
Helix 111	AM3	D	678	682	Right-handed 310
Helix 112	AM4	D	693	704	Right-handed alpha
Helix 113	AM5	D	708	723	Right-handed alpha
Helix 114	AM6	D	729	742	Right-handed alpha
Helix 115	AM7	D	745	758	Right-handed alpha
Helix 116	AM8	E	244	256	Right-handed alpha
Helix 117	AM9	E	256	261	Right-handed alpha
Helix 118	AN1	E	262	270	Right-handed alpha
Helix 119	AN2	E	286	298	Right-handed alpha
Helix 120	AN3	E	308	314	Right-handed alpha
Helix 121	AN4	E	315	327	Right-handed alpha
Helix 122	AN5	E	327	338	Right-handed alpha
Helix 123	AN6	E	339	341	Right-handed 310
Helix 124	AN7	E	350	355	Right-handed 310
Helix 125	AN8	E	369	381	Right-handed alpha
Helix 126	AN9	E	401	405	Right-handed 310
Helix 127	AO1	E	420	432	Right-handed alpha
Helix 128	AO2	E	432	438	Right-handed alpha
Helix 129	AO3	E	446	454	Right-handed alpha
Helix 130	AO4	E	458	478	Right-handed alpha
Helix 131	AO5	E	491	495	Right-handed 310
Helix 132	AO6	E	500	505	Right-handed alpha
Helix 133	AO7	E	506	508	Right-handed 310
Helix 134	AO8	E	520	525	Right-handed alpha
Helix 135	AO9	E	532	551	Right-handed alpha
Helix 136	AP1	E	569	580	Right-handed alpha
Helix 137	AP2	E	590	595	Right-handed alpha
Helix 138	AP3	E	598	614	Right-handed alpha
Helix 139	AP4	E	625	630	Right-handed alpha
Helix 140	AP5	E	640	651	Right-handed alpha
Helix 141	AP6	E	669	676	Right-handed alpha
Helix 142	AP7	E	677	681	Right-handed 310
Helix 143	AP8	E	693	704	Right-handed alpha
Helix 144	AP9	E	708	723	Right-handed alpha
Helix 145	AQ1	E	729	741	Right-handed alpha
Helix 146	AQ2	E	745	758	Right-handed alpha
Helix 147	AQ3	F	247	256	Right-handed alpha
Helix 148	AQ4	F	256	261	Right-handed alpha
Helix 149	AQ5	F	262	267	Right-handed alpha
Helix 150	AQ6	F	286	292	Right-handed alpha
Helix 151	AQ7	F	308	313	Right-handed alpha
Helix 152	AQ8	F	315	322	Right-handed alpha
Helix 153	AQ9	F	322	336	Right-handed alpha
Helix 154	AR1	F	350	355	Right-handed 310
Helix 155	AR2	F	369	378	Right-handed alpha
Helix 156	AR3	F	396	400	Right-handed 310
Helix 157	AR4	F	401	405	Right-handed 310
Helix 158	AR5	F	420	432	Right-handed alpha
Helix 159	AR6	F	432	438	Right-handed alpha
Helix 160	AR7	F	446	454	Right-handed alpha
Helix 161	AR8	F	460	476	Right-handed alpha
Helix 162	AR9	F	491	495	Right-handed 310
Helix 163	AS1	F	500	509	Right-handed alpha
Helix 164	AS2	F	516	523	Right-handed alpha
Helix 165	AS3	F	532	552	Right-handed alpha
Helix 166	AS4	F	569	580	Right-handed alpha
Helix 167	AS5	F	590	595	Right-handed alpha
Helix 168	AS6	F	598	614	Right-handed alpha
Helix 169	AS7	F	625	630	Right-handed alpha
Helix 170	AS8	F	640	651	Right-handed alpha
Helix 171	AS9	F	669	677	Right-handed alpha
Helix 172	AT1	F	678	682	Right-handed 310
Helix 173	AT2	F	693	704	Right-handed alpha
Helix 174	AT3	F	708	723	Right-handed alpha
Helix 175	AT4	F	729	742	Right-handed alpha
Helix 176	AT5	F	745	758	Right-handed alpha

There are 12 sheets in PDB entry 9NUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	346	349	parallel
Strand 3	A	390	394	parallel
Strand 4	A	276	280	parallel
Strand 5	A	412	415	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	589	first strand
Strand 2	A	619	623	parallel
Strand 3	A	661	666	parallel
Strand 4	A	557	563	parallel
Strand 5	A	684	687	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	344	349	parallel
Strand 3	B	388	394	parallel
Strand 4	B	276	280	parallel
Strand 5	B	412	415	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	589	first strand
Strand 2	B	618	623	parallel
Strand 3	B	660	667	parallel
Strand 4	B	557	563	parallel
Strand 5	B	684	687	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	344	349	parallel
Strand 3	C	388	394	parallel
Strand 4	C	276	280	parallel
Strand 5	C	412	415	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	589	first strand
Strand 2	C	618	623	parallel
Strand 3	C	660	667	parallel
Strand 4	C	557	563	parallel
Strand 5	C	684	687	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	307	first strand
Strand 2	D	344	349	parallel
Strand 3	D	388	394	parallel
Strand 4	D	276	280	parallel
Strand 5	D	412	415	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	589	first strand
Strand 2	D	618	623	parallel
Strand 3	D	660	667	parallel
Strand 4	D	557	563	parallel
Strand 5	D	684	687	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	307	first strand
Strand 2	E	346	349	parallel
Strand 3	E	390	394	parallel
Strand 4	E	276	280	parallel
Strand 5	E	412	415	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	585	589	first strand
Strand 2	E	618	623	parallel
Strand 3	E	660	667	parallel
Strand 4	E	557	563	parallel
Strand 5	E	684	687	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	307	first strand
Strand 2	F	344	349	parallel
Strand 3	F	388	394	parallel
Strand 4	F	276	280	parallel
Strand 5	F	412	415	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	585	589	first strand
Strand 2	F	618	623	parallel
Strand 3	F	660	667	parallel
Strand 4	F	557	563	parallel
Strand 5	F	684	687	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NUD