Analysis of interatomic Contacts of Structural Units in PDB entry:
9NUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NUP entry

There are 8 chains in PDB entry 9NUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 7	MET 1965
B	GLN 7	MET 1965
C	GLN 7	MET 1965
D	GLN 7	SER 265
E	GLN 7	MET 1965
F	GLN 7	MET 1965
X	G 8	G 39
Y	C 22	C 53

There are119 helices in PDB entry 9NUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	20	Right-handed alpha
Helix 2	AA2	A	28	41	Right-handed alpha
Helix 3	AA3	A	49	56	Right-handed alpha
Helix 4	AA4	A	56	66	Right-handed alpha
Helix 5	AA5	A	66	86	Right-handed alpha
Helix 6	AA6	A	87	90	Right-handed 310
Helix 7	AA7	A	108	112	Right-handed 310
Helix 8	AA8	A	113	117	Right-handed 310
Helix 9	AA9	A	184	187	Right-handed 310
Helix 10	AB1	A	1262	1274	Right-handed alpha
Helix 11	AB2	A	1277	1287	Right-handed alpha
Helix 12	AB3	A	1293	1306	Right-handed alpha
Helix 13	AB4	A	1333	1343	Right-handed alpha
Helix 14	AB5	A	1746	1751	Right-handed alpha
Helix 15	AB6	A	1765	1778	Right-handed alpha
Helix 16	AB7	A	1814	1819	Right-handed 310
Helix 17	AB8	A	1822	1829	Right-handed alpha
Helix 18	AB9	A	1840	1857	Right-handed alpha
Helix 19	AC1	A	1867	1882	Right-handed alpha
Helix 20	AC2	A	1887	1904	Right-handed alpha
Helix 21	AC3	A	1921	1939	Right-handed alpha
Helix 22	AC4	A	1945	1964	Right-handed alpha
Helix 23	AC5	B	10	20	Right-handed alpha
Helix 24	AC6	B	28	41	Right-handed alpha
Helix 25	AC7	B	49	56	Right-handed alpha
Helix 26	AC8	B	56	66	Right-handed alpha
Helix 27	AC9	B	70	86	Right-handed alpha
Helix 28	AD1	B	87	90	Right-handed 310
Helix 29	AD2	B	108	112	Right-handed 310
Helix 30	AD3	B	113	117	Right-handed 310
Helix 31	AD4	B	184	187	Right-handed 310
Helix 32	AD5	B	201	204	Right-handed 310
Helix 33	AD6	B	220	222	Right-handed 310
Helix 34	AD7	B	1264	1275	Right-handed alpha
Helix 35	AD8	B	1277	1287	Right-handed alpha
Helix 36	AD9	B	1293	1306	Right-handed alpha
Helix 37	AE1	B	1333	1345	Right-handed alpha
Helix 38	AE2	B	1746	1751	Right-handed alpha
Helix 39	AE3	B	1765	1779	Right-handed alpha
Helix 40	AE4	B	1822	1829	Right-handed alpha
Helix 41	AE5	B	1840	1856	Right-handed alpha
Helix 42	AE6	B	1867	1881	Right-handed alpha
Helix 43	AE7	B	1887	1903	Right-handed alpha
Helix 44	AE8	B	1921	1939	Right-handed alpha
Helix 45	AE9	B	1945	1964	Right-handed alpha
Helix 46	AF1	C	10	20	Right-handed alpha
Helix 47	AF2	C	28	41	Right-handed alpha
Helix 48	AF3	C	49	56	Right-handed alpha
Helix 49	AF4	C	56	66	Right-handed alpha
Helix 50	AF5	C	66	86	Right-handed alpha
Helix 51	AF6	C	87	90	Right-handed 310
Helix 52	AF7	C	108	112	Right-handed 310
Helix 53	AF8	C	113	117	Right-handed 310
Helix 54	AF9	C	184	187	Right-handed 310
Helix 55	AG1	C	220	222	Right-handed 310
Helix 56	AG2	C	1262	1275	Right-handed alpha
Helix 57	AG3	C	1277	1286	Right-handed alpha
Helix 58	AG4	C	1293	1306	Right-handed alpha
Helix 59	AG5	C	1333	1343	Right-handed alpha
Helix 60	AG6	C	1746	1751	Right-handed alpha
Helix 61	AG7	C	1765	1779	Right-handed alpha
Helix 62	AG8	C	1822	1829	Right-handed alpha
Helix 63	AG9	C	1841	1856	Right-handed alpha
Helix 64	AH1	C	1867	1881	Right-handed alpha
Helix 65	AH2	C	1887	1903	Right-handed alpha
Helix 66	AH3	C	1921	1939	Right-handed alpha
Helix 67	AH4	C	1945	1965	Right-handed alpha
Helix 68	AH5	D	10	20	Right-handed alpha
Helix 69	AH6	D	28	41	Right-handed alpha
Helix 70	AH7	D	49	56	Right-handed alpha
Helix 71	AH8	D	56	66	Right-handed alpha
Helix 72	AH9	D	66	86	Right-handed alpha
Helix 73	AI1	D	87	90	Right-handed 310
Helix 74	AI2	D	108	112	Right-handed 310
Helix 75	AI3	D	113	117	Right-handed 310
Helix 76	AI4	D	220	222	Right-handed 310
Helix 77	AI5	E	10	20	Right-handed alpha
Helix 78	AI6	E	28	41	Right-handed alpha
Helix 79	AI7	E	49	56	Right-handed alpha
Helix 80	AI8	E	56	66	Right-handed alpha
Helix 81	AI9	E	66	86	Right-handed alpha
Helix 82	AJ1	E	87	90	Right-handed 310
Helix 83	AJ2	E	108	112	Right-handed 310
Helix 84	AJ3	E	113	117	Right-handed 310
Helix 85	AJ4	E	220	222	Right-handed 310
Helix 86	AJ5	E	1262	1275	Right-handed alpha
Helix 87	AJ6	E	1277	1287	Right-handed alpha
Helix 88	AJ7	E	1293	1304	Right-handed alpha
Helix 89	AJ8	E	1333	1345	Right-handed alpha
Helix 90	AJ9	E	1746	1751	Right-handed alpha
Helix 91	AK1	E	1765	1779	Right-handed alpha
Helix 92	AK2	E	1814	1819	Right-handed 310
Helix 93	AK3	E	1822	1829	Right-handed alpha
Helix 94	AK4	E	1840	1856	Right-handed alpha
Helix 95	AK5	E	1867	1881	Right-handed alpha
Helix 96	AK6	E	1887	1904	Right-handed alpha
Helix 97	AK7	E	1921	1938	Right-handed alpha
Helix 98	AK8	E	1946	1965	Right-handed alpha
Helix 99	AK9	F	9	20	Right-handed alpha
Helix 100	AL1	F	28	41	Right-handed alpha
Helix 101	AL2	F	49	56	Right-handed alpha
Helix 102	AL3	F	56	66	Right-handed alpha
Helix 103	AL4	F	66	86	Right-handed alpha
Helix 104	AL5	F	113	117	Right-handed 310
Helix 105	AL6	F	200	204	Right-handed 310
Helix 106	AL7	F	220	222	Right-handed 310
Helix 107	AL8	F	1262	1275	Right-handed alpha
Helix 108	AL9	F	1277	1287	Right-handed alpha
Helix 109	AM1	F	1293	1306	Right-handed alpha
Helix 110	AM2	F	1333	1345	Right-handed alpha
Helix 111	AM3	F	1746	1751	Right-handed alpha
Helix 112	AM4	F	1765	1778	Right-handed alpha
Helix 113	AM5	F	1814	1819	Right-handed alpha
Helix 114	AM6	F	1822	1829	Right-handed alpha
Helix 115	AM7	F	1840	1857	Right-handed alpha
Helix 116	AM8	F	1869	1881	Right-handed alpha
Helix 117	AM9	F	1887	1904	Right-handed alpha
Helix 118	AN1	F	1921	1939	Right-handed alpha
Helix 119	AN2	F	1945	1964	Right-handed alpha

There are 38 sheets in PDB entry 9NUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	97	101	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	252	253	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	188	199	anti-parallel
Strand 4	A	212	218	anti-parallel
Strand 5	A	255	264	parallel
Strand 6	A	230	239	anti-parallel
Strand 7	A	121	130	anti-parallel
Strand 8	A	188	199	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	142	145	anti-parallel
Strand 3	A	179	182	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	B	134	139	anti-parallel
Strand 3	B	188	199	anti-parallel
Strand 4	B	212	218	anti-parallel
Strand 5	B	255	264	parallel
Strand 6	B	230	239	anti-parallel
Strand 7	B	121	130	anti-parallel
Strand 8	B	188	199	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1799	1800	first strand
Strand 2	A	1324	1327	parallel
Strand 3	A	1831	1834	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1348	1350	first strand
Strand 2	A	1755	1757	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1734	first strand
Strand 2	A	1741	1745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1780	1783	first strand
Strand 2	A	1790	1793	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1885	1886	first strand
Strand 2	A	1943	1944	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	97	101	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	154	first strand
Strand 2	B	141	144	anti-parallel
Strand 3	B	180	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	176	177	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	188	198	anti-parallel
Strand 4	C	212	218	anti-parallel
Strand 5	C	256	264	parallel
Strand 6	C	230	238	anti-parallel
Strand 7	C	120	130	anti-parallel
Strand 8	C	188	198	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1799	1800	first strand
Strand 2	B	1324	1325	parallel
Strand 3	B	1831	1832	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1730	1734	first strand
Strand 2	B	1741	1745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1780	1785	first strand
Strand 2	B	1788	1793	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	97	101	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	154	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	179	182	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	188	198	anti-parallel
Strand 4	D	212	218	anti-parallel
Strand 5	D	255	264	parallel
Strand 6	D	230	239	anti-parallel
Strand 7	D	120	130	anti-parallel
Strand 8	D	188	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1755	1756	first strand
Strand 2	C	1797	1800	parallel
Strand 3	C	1324	1325	parallel
Strand 4	C	1831	1832	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1351	1352	first strand
Strand 2	C	1758	1759	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1730	1731	first strand
Strand 2	C	1744	1745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1780	1783	first strand
Strand 2	C	1790	1793	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	97	101	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	141	145	anti-parallel
Strand 3	D	179	182	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	253	first strand
Strand 2	E	134	139	anti-parallel
Strand 3	E	188	198	anti-parallel
Strand 4	E	212	218	anti-parallel
Strand 5	E	255	264	parallel
Strand 6	E	230	239	anti-parallel
Strand 7	E	121	130	anti-parallel
Strand 8	E	188	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	48	first strand
Strand 2	E	97	101	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	142	145	anti-parallel
Strand 3	E	179	182	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	F	134	139	anti-parallel
Strand 3	F	188	198	anti-parallel
Strand 4	F	212	218	anti-parallel
Strand 5	F	255	264	parallel
Strand 6	F	230	239	anti-parallel
Strand 7	F	121	130	anti-parallel
Strand 8	F	188	198	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1348	1352	first strand
Strand 2	E	1755	1759	parallel
Strand 3	E	1797	1802	parallel
Strand 4	E	1323	1328	parallel
Strand 5	E	1831	1835	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1731	1734	first strand
Strand 2	E	1741	1744	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1780	1783	first strand
Strand 2	E	1790	1793	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	99	101	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	154	first strand
Strand 2	F	141	145	anti-parallel
Strand 3	F	179	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	176	177	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1348	1350	first strand
Strand 2	F	1755	1758	parallel
Strand 3	F	1797	1802	parallel
Strand 4	F	1324	1328	parallel
Strand 5	F	1831	1835	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1730	1734	first strand
Strand 2	F	1741	1745	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1780	1784	first strand
Strand 2	F	1789	1793	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NUP