Analysis of interatomic Contacts of Structural Units in PDB entry:
9NV1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NV1 entry

There are 7 chains in PDB entry 9NV1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 239	ALA 758
B	LEU 239	ALA 758
C	LEU 239	ALA 758
D	LEU 239	ALA 758
E	LEU 239	ALA 758
F	LEU 239	ALA 758
G	LEU 239	ALA 758

There are201 helices in PDB entry 9NV1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	244	256	Right-handed alpha
Helix 2	AA2	A	256	261	Right-handed alpha
Helix 3	AA3	A	262	270	Right-handed alpha
Helix 4	AA4	A	286	299	Right-handed alpha
Helix 5	AA5	A	308	314	Right-handed alpha
Helix 6	AA6	A	315	327	Right-handed alpha
Helix 7	AA7	A	327	338	Right-handed alpha
Helix 8	AA8	A	339	341	Right-handed 310
Helix 9	AA9	A	351	356	Right-handed alpha
Helix 10	AB1	A	358	366	Right-handed alpha
Helix 11	AB2	A	366	381	Right-handed alpha
Helix 12	AB3	A	396	400	Right-handed 310
Helix 13	AB4	A	420	438	Right-handed alpha
Helix 14	AB5	A	446	454	Right-handed alpha
Helix 15	AB6	A	458	476	Right-handed alpha
Helix 16	AB7	A	498	506	Right-handed alpha
Helix 17	AB8	A	516	525	Right-handed alpha
Helix 18	AB9	A	532	551	Right-handed alpha
Helix 19	AC1	A	569	580	Right-handed alpha
Helix 20	AC2	A	598	614	Right-handed alpha
Helix 21	AC3	A	625	630	Right-handed alpha
Helix 22	AC4	A	640	651	Right-handed alpha
Helix 23	AC5	A	669	677	Right-handed alpha
Helix 24	AC6	A	678	682	Right-handed 310
Helix 25	AC7	A	693	705	Right-handed alpha
Helix 26	AC8	A	708	723	Right-handed alpha
Helix 27	AC9	A	729	742	Right-handed alpha
Helix 28	AD1	A	745	758	Right-handed alpha
Helix 29	AD2	B	244	256	Right-handed alpha
Helix 30	AD3	B	257	260	Right-handed 310
Helix 31	AD4	B	262	270	Right-handed alpha
Helix 32	AD5	B	286	299	Right-handed alpha
Helix 33	AD6	B	308	314	Right-handed alpha
Helix 34	AD7	B	315	327	Right-handed alpha
Helix 35	AD8	B	327	338	Right-handed alpha
Helix 36	AD9	B	339	341	Right-handed 310
Helix 37	AE1	B	351	355	Right-handed 310
Helix 38	AE2	B	358	366	Right-handed alpha
Helix 39	AE3	B	366	381	Right-handed alpha
Helix 40	AE4	B	396	400	Right-handed 310
Helix 41	AE5	B	401	406	Right-handed 310
Helix 42	AE6	B	420	437	Right-handed alpha
Helix 43	AE7	B	446	454	Right-handed alpha
Helix 44	AE8	B	458	476	Right-handed alpha
Helix 45	AE9	B	491	495	Right-handed 310
Helix 46	AF1	B	498	506	Right-handed alpha
Helix 47	AF2	B	516	522	Right-handed alpha
Helix 48	AF3	B	532	551	Right-handed alpha
Helix 49	AF4	B	569	580	Right-handed alpha
Helix 50	AF5	B	598	614	Right-handed alpha
Helix 51	AF6	B	625	630	Right-handed alpha
Helix 52	AF7	B	640	651	Right-handed alpha
Helix 53	AF8	B	669	676	Right-handed alpha
Helix 54	AF9	B	693	705	Right-handed alpha
Helix 55	AG1	B	708	723	Right-handed alpha
Helix 56	AG2	B	729	742	Right-handed alpha
Helix 57	AG3	B	745	758	Right-handed alpha
Helix 58	AG4	C	244	256	Right-handed alpha
Helix 59	AG5	C	256	261	Right-handed alpha
Helix 60	AG6	C	262	270	Right-handed alpha
Helix 61	AG7	C	286	299	Right-handed alpha
Helix 62	AG8	C	308	314	Right-handed alpha
Helix 63	AG9	C	315	327	Right-handed alpha
Helix 64	AH1	C	327	338	Right-handed alpha
Helix 65	AH2	C	339	341	Right-handed 310
Helix 66	AH3	C	351	355	Right-handed 310
Helix 67	AH4	C	358	366	Right-handed alpha
Helix 68	AH5	C	366	381	Right-handed alpha
Helix 69	AH6	C	401	405	Right-handed 310
Helix 70	AH7	C	420	437	Right-handed alpha
Helix 71	AH8	C	446	454	Right-handed alpha
Helix 72	AH9	C	458	476	Right-handed alpha
Helix 73	AI1	C	498	506	Right-handed alpha
Helix 74	AI2	C	516	525	Right-handed alpha
Helix 75	AI3	C	532	549	Right-handed alpha
Helix 76	AI4	C	569	580	Right-handed alpha
Helix 77	AI5	C	590	595	Right-handed alpha
Helix 78	AI6	C	598	614	Right-handed alpha
Helix 79	AI7	C	625	630	Right-handed alpha
Helix 80	AI8	C	640	651	Right-handed alpha
Helix 81	AI9	C	669	676	Right-handed alpha
Helix 82	AJ1	C	693	704	Right-handed alpha
Helix 83	AJ2	C	708	723	Right-handed alpha
Helix 84	AJ3	C	732	742	Right-handed alpha
Helix 85	AJ4	C	745	758	Right-handed alpha
Helix 86	AJ5	D	244	256	Right-handed alpha
Helix 87	AJ6	D	256	261	Right-handed alpha
Helix 88	AJ7	D	262	270	Right-handed alpha
Helix 89	AJ8	D	286	298	Right-handed alpha
Helix 90	AJ9	D	308	314	Right-handed alpha
Helix 91	AK1	D	315	327	Right-handed alpha
Helix 92	AK2	D	327	338	Right-handed alpha
Helix 93	AK3	D	339	341	Right-handed 310
Helix 94	AK4	D	350	355	Right-handed 310
Helix 95	AK5	D	358	366	Right-handed alpha
Helix 96	AK6	D	366	381	Right-handed alpha
Helix 97	AK7	D	401	405	Right-handed 310
Helix 98	AK8	D	420	437	Right-handed alpha
Helix 99	AK9	D	446	454	Right-handed alpha
Helix 100	AL1	D	458	476	Right-handed alpha
Helix 101	AL2	D	491	495	Right-handed 310
Helix 102	AL3	D	498	506	Right-handed alpha
Helix 103	AL4	D	516	525	Right-handed alpha
Helix 104	AL5	D	532	551	Right-handed alpha
Helix 105	AL6	D	569	580	Right-handed alpha
Helix 106	AL7	D	598	614	Right-handed alpha
Helix 107	AL8	D	625	630	Right-handed alpha
Helix 108	AL9	D	640	651	Right-handed alpha
Helix 109	AM1	D	669	677	Right-handed alpha
Helix 110	AM2	D	678	682	Right-handed 310
Helix 111	AM3	D	693	704	Right-handed alpha
Helix 112	AM4	D	708	723	Right-handed alpha
Helix 113	AM5	D	729	742	Right-handed alpha
Helix 114	AM6	D	745	758	Right-handed alpha
Helix 115	AM7	E	244	256	Right-handed alpha
Helix 116	AM8	E	257	260	Right-handed 310
Helix 117	AM9	E	262	270	Right-handed alpha
Helix 118	AN1	E	286	299	Right-handed alpha
Helix 119	AN2	E	308	314	Right-handed alpha
Helix 120	AN3	E	315	327	Right-handed alpha
Helix 121	AN4	E	327	338	Right-handed alpha
Helix 122	AN5	E	339	341	Right-handed 310
Helix 123	AN6	E	351	356	Right-handed alpha
Helix 124	AN7	E	358	366	Right-handed alpha
Helix 125	AN8	E	366	381	Right-handed alpha
Helix 126	AN9	E	401	406	Right-handed 310
Helix 127	AO1	E	420	437	Right-handed alpha
Helix 128	AO2	E	446	454	Right-handed alpha
Helix 129	AO3	E	458	476	Right-handed alpha
Helix 130	AO4	E	498	506	Right-handed alpha
Helix 131	AO5	E	516	525	Right-handed alpha
Helix 132	AO6	E	532	551	Right-handed alpha
Helix 133	AO7	E	569	580	Right-handed alpha
Helix 134	AO8	E	590	595	Right-handed alpha
Helix 135	AO9	E	598	614	Right-handed alpha
Helix 136	AP1	E	625	630	Right-handed alpha
Helix 137	AP2	E	640	651	Right-handed alpha
Helix 138	AP3	E	669	677	Right-handed alpha
Helix 139	AP4	E	693	704	Right-handed alpha
Helix 140	AP5	E	708	723	Right-handed alpha
Helix 141	AP6	E	729	742	Right-handed alpha
Helix 142	AP7	E	745	758	Right-handed alpha
Helix 143	AP8	F	244	256	Right-handed alpha
Helix 144	AP9	F	256	261	Right-handed alpha
Helix 145	AQ1	F	262	270	Right-handed alpha
Helix 146	AQ2	F	286	299	Right-handed alpha
Helix 147	AQ3	F	308	314	Right-handed alpha
Helix 148	AQ4	F	315	327	Right-handed alpha
Helix 149	AQ5	F	327	338	Right-handed alpha
Helix 150	AQ6	F	339	341	Right-handed 310
Helix 151	AQ7	F	351	356	Right-handed alpha
Helix 152	AQ8	F	358	366	Right-handed alpha
Helix 153	AQ9	F	366	381	Right-handed alpha
Helix 154	AR1	F	401	406	Right-handed 310
Helix 155	AR2	F	420	437	Right-handed alpha
Helix 156	AR3	F	446	454	Right-handed alpha
Helix 157	AR4	F	458	476	Right-handed alpha
Helix 158	AR5	F	491	495	Right-handed 310
Helix 159	AR6	F	498	506	Right-handed alpha
Helix 160	AR7	F	516	525	Right-handed alpha
Helix 161	AR8	F	532	551	Right-handed alpha
Helix 162	AR9	F	569	580	Right-handed alpha
Helix 163	AS1	F	590	595	Right-handed alpha
Helix 164	AS2	F	598	614	Right-handed alpha
Helix 165	AS3	F	625	630	Right-handed alpha
Helix 166	AS4	F	640	651	Right-handed alpha
Helix 167	AS5	F	669	677	Right-handed alpha
Helix 168	AS6	F	678	682	Right-handed 310
Helix 169	AS7	F	693	704	Right-handed alpha
Helix 170	AS8	F	708	723	Right-handed alpha
Helix 171	AS9	F	729	742	Right-handed alpha
Helix 172	AT1	F	745	758	Right-handed alpha
Helix 173	AT2	G	244	256	Right-handed alpha
Helix 174	AT3	G	256	261	Right-handed alpha
Helix 175	AT4	G	262	270	Right-handed alpha
Helix 176	AT5	G	286	299	Right-handed alpha
Helix 177	AT6	G	308	314	Right-handed alpha
Helix 178	AT7	G	315	327	Right-handed alpha
Helix 179	AT8	G	327	338	Right-handed alpha
Helix 180	AT9	G	339	341	Right-handed 310
Helix 181	AU1	G	351	356	Right-handed alpha
Helix 182	AU2	G	358	366	Right-handed alpha
Helix 183	AU3	G	366	381	Right-handed alpha
Helix 184	AU4	G	396	400	Right-handed 310
Helix 185	AU5	G	401	406	Right-handed 310
Helix 186	AU6	G	420	437	Right-handed alpha
Helix 187	AU7	G	446	454	Right-handed alpha
Helix 188	AU8	G	458	476	Right-handed alpha
Helix 189	AU9	G	498	506	Right-handed alpha
Helix 190	AV1	G	516	525	Right-handed alpha
Helix 191	AV2	G	532	551	Right-handed alpha
Helix 192	AV3	G	569	580	Right-handed alpha
Helix 193	AV4	G	590	595	Right-handed 310
Helix 194	AV5	G	598	613	Right-handed alpha
Helix 195	AV6	G	625	630	Right-handed alpha
Helix 196	AV7	G	640	651	Right-handed alpha
Helix 197	AV8	G	669	676	Right-handed alpha
Helix 198	AV9	G	693	705	Right-handed alpha
Helix 199	AW1	G	708	723	Right-handed alpha
Helix 200	AW2	G	729	742	Right-handed alpha
Helix 201	AW3	G	745	758	Right-handed alpha

There are 14 sheets in PDB entry 9NV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	344	349	parallel
Strand 3	A	388	394	parallel
Strand 4	A	276	280	parallel
Strand 5	A	412	415	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	589	first strand
Strand 2	A	620	623	parallel
Strand 3	A	661	667	parallel
Strand 4	A	557	563	parallel
Strand 5	A	684	687	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	344	349	parallel
Strand 3	B	388	394	parallel
Strand 4	B	276	280	parallel
Strand 5	B	410	415	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	589	first strand
Strand 2	B	619	623	parallel
Strand 3	B	661	667	parallel
Strand 4	B	557	563	parallel
Strand 5	B	684	687	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	344	349	parallel
Strand 3	C	388	394	parallel
Strand 4	C	276	280	parallel
Strand 5	C	412	415	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	589	first strand
Strand 2	C	620	623	parallel
Strand 3	C	661	667	parallel
Strand 4	C	557	563	parallel
Strand 5	C	684	687	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	307	first strand
Strand 2	D	344	349	parallel
Strand 3	D	388	394	parallel
Strand 4	D	276	280	parallel
Strand 5	D	412	415	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	589	first strand
Strand 2	D	618	624	parallel
Strand 3	D	660	667	parallel
Strand 4	D	557	563	parallel
Strand 5	D	684	687	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	307	first strand
Strand 2	E	344	349	parallel
Strand 3	E	388	394	parallel
Strand 4	E	276	280	parallel
Strand 5	E	412	415	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	586	589	first strand
Strand 2	E	618	623	parallel
Strand 3	E	660	667	parallel
Strand 4	E	557	563	parallel
Strand 5	E	684	687	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	307	first strand
Strand 2	F	344	349	parallel
Strand 3	F	388	394	parallel
Strand 4	F	276	280	parallel
Strand 5	F	412	415	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	585	589	first strand
Strand 2	F	618	623	parallel
Strand 3	F	660	667	parallel
Strand 4	F	557	563	parallel
Strand 5	F	684	687	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	307	first strand
Strand 2	G	344	349	parallel
Strand 3	G	388	394	parallel
Strand 4	G	276	280	parallel
Strand 5	G	412	415	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	586	589	first strand
Strand 2	G	618	624	parallel
Strand 3	G	660	667	parallel
Strand 4	G	557	563	parallel
Strand 5	G	684	687	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NV1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NV1