Analysis of interatomic Contacts of Structural Units in PDB entry:
9NV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NV3 entry

There are 2 chains in PDB entry 9NV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ARG 201
C
 THR 2PHE 867
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9NV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 20Right-handed alpha
Helix 2
AA2
A
21 26Right-handed alpha
Helix 3
AA3
A
44 59Right-handed alpha
Helix 4
AA4
A
60 62Right-handed 310
Helix 5
AA5
A
70 76Right-handed alpha
Helix 6
AA6
A
82 88Right-handed alpha
Helix 7
AA7
A
90 95Right-handed alpha
Helix 8
AA8
A
95 105Right-handed alpha
Helix 9
AA9
A
108 111Right-handed 310
Helix 10
AB1
A
112 120Right-handed alpha
Helix 11
AB2
A
141 149Right-handed alpha
Helix 12
AB3
A
150 152Right-handed 310
Helix 13
AB4
A
193 197Right-handed 310
Helix 14
AB5
C
3 17Right-handed alpha
Helix 15
AB6
C
52 62Right-handed alpha
Helix 16
AB7
C
79 83Right-handed 310
Helix 17
AB8
C
85 92Right-handed alpha
Helix 18
AB9
C
100 107Right-handed alpha
Helix 19
AC1
C
114 121Right-handed alpha
Helix 20
AC2
C
122 125Right-handed 310
Helix 21
AC3
C
126 135Right-handed alpha
Helix 22
AC4
C
142 156Right-handed alpha
Helix 23
AC5
C
161 177Right-handed alpha
Helix 24
AC6
C
182 193Right-handed alpha
Helix 25
AC7
C
195 207Right-handed alpha
Helix 26
AC8
C
216 232Right-handed alpha
Helix 27
AC9
C
238 242Right-handed 310
Helix 28
AD1
C
248 265Right-handed alpha
Helix 29
AD2
C
268 270Right-handed 310
Helix 30
AD3
C
271 279Right-handed alpha
Helix 31
AD4
C
284 290Right-handed alpha
Helix 32
AD5
C
294 300Right-handed 310
Helix 33
AD6
C
303 320Right-handed alpha
Helix 34
AD7
C
326 333Right-handed alpha
Helix 35
AD8
C
333 340Right-handed alpha
Helix 36
AD9
C
340 346Right-handed alpha
Helix 37
AE1
C
346 369Right-handed alpha
Helix 38
AE2
C
377 388Right-handed alpha
Helix 39
AE3
C
390 407Right-handed alpha
Helix 40
AE4
C
408 410Right-handed 310
Helix 41
AE5
C
416 428Right-handed alpha
Helix 42
AE6
C
428 445Right-handed alpha
Helix 43
AE7
C
446 449Right-handed 310
Helix 44
AE8
C
460 465Right-handed alpha
Helix 45
AE9
C
466 472Right-handed 310
Helix 46
AF1
C
489 497Right-handed alpha
Helix 47
AF2
C
518 525Right-handed alpha
Helix 48
AF3
C
551 558Right-handed alpha
Helix 49
AF4
C
559 563Right-handed 310
Helix 50
AF5
C
571 575Right-handed 310
Helix 51
AF6
C
577 582Right-handed 310
Helix 52
AF7
C
597 602Right-handed alpha
Helix 53
AF8
C
603 607Right-handed 310
Helix 54
AF9
C
609 622Right-handed alpha
Helix 55
AG1
C
690 695Right-handed alpha
Helix 56
AG2
C
726 730Right-handed alpha
Helix 57
AG3
C
815 819Right-handed 310
Helix 58
AG4
C
862 866Right-handed 310
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There are 10 sheets in PDB entry 9NV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
36 40parallel
Strand 5
A
186 187parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
127 131parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 47first strand
Strand 2
C
69 73parallel
Strand 3
C
21 25parallel
Strand 4
C
93 94parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
479 483first strand
Strand 2
C
590 594parallel
Strand 3
C
565 567parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
506 507first strand
Strand 2
C
736 737anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
511 512first strand
Strand 2
C
731 732anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
532 533first strand
Strand 2
C
543 544anti-parallel
Strand 3
C
547 548anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
670 671first strand
Strand 2
C
674 677anti-parallel
Strand 3
C
702 704anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
769 772first strand
Strand 2
C
823 826anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
800 807first strand
Strand 2
C
789 795anti-parallel
Strand 3
C
838 844anti-parallel
Strand 4
C
852 856anti-parallel
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