Analysis of interatomic Contacts of Structural Units in PDB entry:
9NV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NV5 entry

There are 4 chains in PDB entry 9NV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3SER 237
B
 ARG 3GLU 238
C
 PRO 8GLU 238
D
 PRO 8GLU 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9NV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
37 54Right-handed alpha
Helix 3
AA3
A
66 80Right-handed alpha
Helix 4
AA4
A
91 94Right-handed 310
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
105 113Right-handed alpha
Helix 7
AA7
A
114 124Right-handed alpha
Helix 8
AA8
A
138 146Right-handed 310
Helix 9
AA9
A
149 153Right-handed 310
Helix 10
AB1
A
158 180Right-handed alpha
Helix 11
AB2
A
189 202Right-handed alpha
Helix 12
AB3
B
20 26Right-handed alpha
Helix 13
AB4
B
37 54Right-handed alpha
Helix 14
AB5
B
66 80Right-handed alpha
Helix 15
AB6
B
91 94Right-handed 310
Helix 16
AB7
B
98 102Right-handed 310
Helix 17
AB8
B
105 113Right-handed alpha
Helix 18
AB9
B
114 124Right-handed alpha
Helix 19
AC1
B
138 146Right-handed 310
Helix 20
AC2
B
149 153Right-handed 310
Helix 21
AC3
B
158 180Right-handed alpha
Helix 22
AC4
B
189 202Right-handed alpha
Helix 23
AC5
C
20 25Right-handed alpha
Helix 24
AC6
C
37 54Right-handed alpha
Helix 25
AC7
C
66 80Right-handed alpha
Helix 26
AC8
C
91 94Right-handed 310
Helix 27
AC9
C
98 102Right-handed 310
Helix 28
AD1
C
105 113Right-handed alpha
Helix 29
AD2
C
114 124Right-handed alpha
Helix 30
AD3
C
138 146Right-handed 310
Helix 31
AD4
C
149 153Right-handed 310
Helix 32
AD5
C
158 174Right-handed alpha
Helix 33
AD6
C
174 180Right-handed alpha
Helix 34
AD7
C
189 202Right-handed alpha
Helix 35
AD8
D
20 25Right-handed alpha
Helix 36
AD9
D
37 54Right-handed alpha
Helix 37
AE1
D
66 80Right-handed alpha
Helix 38
AE2
D
91 94Right-handed 310
Helix 39
AE3
D
98 102Right-handed 310
Helix 40
AE4
D
105 113Right-handed alpha
Helix 41
AE5
D
114 121Right-handed alpha
Helix 42
AE6
D
138 146Right-handed 310
Helix 43
AE7
D
149 153Right-handed 310
Helix 44
AE8
D
158 174Right-handed alpha
Helix 45
AE9
D
174 180Right-handed alpha
Helix 46
AF1
D
189 202Right-handed alpha
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There are 4 sheets in PDB entry 9NV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
60 63parallel
Strand 3
A
183 188parallel
Strand 4
A
10 16parallel
Strand 5
A
219 224anti-parallel
Strand 6
A
230 236anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
60 63parallel
Strand 3
B
183 188parallel
Strand 4
B
10 16parallel
Strand 5
B
219 224anti-parallel
Strand 6
B
230 236anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 89first strand
Strand 2
C
60 63parallel
Strand 3
C
183 188parallel
Strand 4
C
10 16parallel
Strand 5
C
219 224anti-parallel
Strand 6
C
230 236anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 89first strand
Strand 2
D
60 63parallel
Strand 3
D
183 188parallel
Strand 4
D
10 16parallel
Strand 5
D
219 224anti-parallel
Strand 6
D
230 236anti-parallel
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