Analysis of interatomic Contacts of Structural Units in PDB entry:
9NV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NV9 entry

There are 7 chains in PDB entry 9NV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 215	GLU 736
B	PHE 215	GLU 736
C	PHE 215	GLU 736
D	PHE 215	GLU 736
E	PHE 215	GLU 736
F	PHE 215	GLU 736
G	PHE 215	GLU 736

There are208 helices in PDB entry 9NV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	215	219	Right-handed 310
Helix 2	AA2	A	223	240	Right-handed alpha
Helix 3	AA3	A	241	249	Right-handed alpha
Helix 4	AA4	A	266	277	Right-handed alpha
Helix 5	AA5	A	287	292	Right-handed alpha
Helix 6	AA6	A	296	306	Right-handed alpha
Helix 7	AA7	A	306	314	Right-handed alpha
Helix 8	AA8	A	329	334	Right-handed alpha
Helix 9	AA9	A	351	359	Right-handed alpha
Helix 10	AB1	A	375	379	Right-handed 310
Helix 11	AB2	A	380	384	Right-handed 310
Helix 12	AB3	A	401	411	Right-handed alpha
Helix 13	AB4	A	411	418	Right-handed alpha
Helix 14	AB5	A	425	433	Right-handed alpha
Helix 15	AB6	A	437	458	Right-handed alpha
Helix 16	AB7	A	476	484	Right-handed alpha
Helix 17	AB8	A	495	503	Right-handed alpha
Helix 18	AB9	A	511	531	Right-handed alpha
Helix 19	AC1	A	548	560	Right-handed alpha
Helix 20	AC2	A	569	573	Right-handed 310
Helix 21	AC3	A	577	593	Right-handed alpha
Helix 22	AC4	A	604	609	Right-handed alpha
Helix 23	AC5	A	619	630	Right-handed alpha
Helix 24	AC6	A	648	655	Right-handed alpha
Helix 25	AC7	A	672	684	Right-handed alpha
Helix 26	AC8	A	687	699	Right-handed alpha
Helix 27	AC9	A	706	718	Right-handed alpha
Helix 28	AD1	A	721	723	Right-handed 310
Helix 29	AD2	A	724	735	Right-handed alpha
Helix 30	AD3	A	736	736	Right-handed 310
Helix 31	AD4	B	215	219	Right-handed 310
Helix 32	AD5	B	223	236	Right-handed alpha
Helix 33	AD6	B	237	240	Right-handed 310
Helix 34	AD7	B	241	249	Right-handed alpha
Helix 35	AD8	B	265	278	Right-handed alpha
Helix 36	AD9	B	286	292	Right-handed alpha
Helix 37	AE1	B	296	306	Right-handed alpha
Helix 38	AE2	B	306	316	Right-handed alpha
Helix 39	AE3	B	317	320	Right-handed 310
Helix 40	AE4	B	351	359	Right-handed alpha
Helix 41	AE5	B	375	379	Right-handed 310
Helix 42	AE6	B	380	384	Right-handed 310
Helix 43	AE7	B	399	411	Right-handed alpha
Helix 44	AE8	B	411	418	Right-handed alpha
Helix 45	AE9	B	425	433	Right-handed alpha
Helix 46	AF1	B	437	458	Right-handed alpha
Helix 47	AF2	B	476	484	Right-handed alpha
Helix 48	AF3	B	495	503	Right-handed alpha
Helix 49	AF4	B	511	531	Right-handed alpha
Helix 50	AF5	B	548	559	Right-handed alpha
Helix 51	AF6	B	569	573	Right-handed 310
Helix 52	AF7	B	577	593	Right-handed alpha
Helix 53	AF8	B	604	609	Right-handed alpha
Helix 54	AF9	B	619	630	Right-handed alpha
Helix 55	AG1	B	648	655	Right-handed alpha
Helix 56	AG2	B	672	684	Right-handed alpha
Helix 57	AG3	B	687	699	Right-handed alpha
Helix 58	AG4	B	706	715	Right-handed alpha
Helix 59	AG5	B	716	720	Right-handed 310
Helix 60	AG6	B	724	735	Right-handed alpha
Helix 61	AG7	B	736	736	Right-handed 310
Helix 62	AG8	C	215	219	Right-handed 310
Helix 63	AG9	C	223	236	Right-handed alpha
Helix 64	AH1	C	237	240	Right-handed 310
Helix 65	AH2	C	241	249	Right-handed alpha
Helix 66	AH3	C	265	277	Right-handed alpha
Helix 67	AH4	C	286	293	Right-handed alpha
Helix 68	AH5	C	296	306	Right-handed alpha
Helix 69	AH6	C	306	317	Right-handed alpha
Helix 70	AH7	C	318	320	Right-handed 310
Helix 71	AH8	C	329	334	Right-handed alpha
Helix 72	AH9	C	351	359	Right-handed alpha
Helix 73	AI1	C	375	379	Right-handed 310
Helix 74	AI2	C	380	384	Right-handed 310
Helix 75	AI3	C	399	411	Right-handed alpha
Helix 76	AI4	C	411	418	Right-handed alpha
Helix 77	AI5	C	425	433	Right-handed alpha
Helix 78	AI6	C	437	458	Right-handed alpha
Helix 79	AI7	C	476	484	Right-handed alpha
Helix 80	AI8	C	495	503	Right-handed alpha
Helix 81	AI9	C	511	531	Right-handed alpha
Helix 82	AJ1	C	548	559	Right-handed alpha
Helix 83	AJ2	C	577	593	Right-handed alpha
Helix 84	AJ3	C	604	610	Right-handed alpha
Helix 85	AJ4	C	619	630	Right-handed alpha
Helix 86	AJ5	C	648	653	Right-handed alpha
Helix 87	AJ6	C	672	684	Right-handed alpha
Helix 88	AJ7	C	687	699	Right-handed alpha
Helix 89	AJ8	C	706	718	Right-handed alpha
Helix 90	AJ9	C	724	735	Right-handed alpha
Helix 91	AK1	C	736	736	Right-handed 310
Helix 92	AK2	D	215	219	Right-handed 310
Helix 93	AK3	D	223	236	Right-handed alpha
Helix 94	AK4	D	237	239	Right-handed 310
Helix 95	AK5	D	241	249	Right-handed alpha
Helix 96	AK6	D	266	277	Right-handed alpha
Helix 97	AK7	D	286	293	Right-handed alpha
Helix 98	AK8	D	296	306	Right-handed alpha
Helix 99	AK9	D	306	317	Right-handed alpha
Helix 100	AL1	D	318	320	Right-handed 310
Helix 101	AL2	D	351	359	Right-handed alpha
Helix 102	AL3	D	375	379	Right-handed 310
Helix 103	AL4	D	380	384	Right-handed 310
Helix 104	AL5	D	399	411	Right-handed alpha
Helix 105	AL6	D	411	418	Right-handed alpha
Helix 106	AL7	D	425	433	Right-handed alpha
Helix 107	AL8	D	437	458	Right-handed alpha
Helix 108	AL9	D	476	484	Right-handed alpha
Helix 109	AM1	D	496	503	Right-handed alpha
Helix 110	AM2	D	511	531	Right-handed alpha
Helix 111	AM3	D	548	559	Right-handed alpha
Helix 112	AM4	D	569	573	Right-handed 310
Helix 113	AM5	D	577	592	Right-handed alpha
Helix 114	AM6	D	593	595	Right-handed 310
Helix 115	AM7	D	604	609	Right-handed alpha
Helix 116	AM8	D	620	630	Right-handed alpha
Helix 117	AM9	D	648	653	Right-handed alpha
Helix 118	AN1	D	672	684	Right-handed alpha
Helix 119	AN2	D	687	699	Right-handed alpha
Helix 120	AN3	D	706	717	Right-handed alpha
Helix 121	AN4	D	718	720	Right-handed 310
Helix 122	AN5	D	724	735	Right-handed alpha
Helix 123	AN6	D	736	736	Right-handed 310
Helix 124	AN7	E	215	219	Right-handed 310
Helix 125	AN8	E	223	240	Right-handed alpha
Helix 126	AN9	E	241	249	Right-handed alpha
Helix 127	AO1	E	266	277	Right-handed alpha
Helix 128	AO2	E	286	292	Right-handed alpha
Helix 129	AO3	E	296	316	Right-handed alpha
Helix 130	AO4	E	351	359	Right-handed alpha
Helix 131	AO5	E	375	379	Right-handed 310
Helix 132	AO6	E	380	384	Right-handed 310
Helix 133	AO7	E	399	411	Right-handed alpha
Helix 134	AO8	E	411	418	Right-handed alpha
Helix 135	AO9	E	425	433	Right-handed alpha
Helix 136	AP1	E	437	458	Right-handed alpha
Helix 137	AP2	E	476	484	Right-handed alpha
Helix 138	AP3	E	495	503	Right-handed alpha
Helix 139	AP4	E	511	531	Right-handed alpha
Helix 140	AP5	E	548	559	Right-handed alpha
Helix 141	AP6	E	577	593	Right-handed alpha
Helix 142	AP7	E	604	609	Right-handed alpha
Helix 143	AP8	E	619	630	Right-handed alpha
Helix 144	AP9	E	648	655	Right-handed alpha
Helix 145	AQ1	E	672	684	Right-handed alpha
Helix 146	AQ2	E	690	699	Right-handed alpha
Helix 147	AQ3	E	706	718	Right-handed alpha
Helix 148	AQ4	E	719	720	Right-handed 310
Helix 149	AQ5	E	721	723	Right-handed 310
Helix 150	AQ6	E	724	735	Right-handed alpha
Helix 151	AQ7	E	736	736	Right-handed 310
Helix 152	AQ8	F	215	219	Right-handed 310
Helix 153	AQ9	F	223	236	Right-handed alpha
Helix 154	AR1	F	241	247	Right-handed alpha
Helix 155	AR2	F	265	277	Right-handed alpha
Helix 156	AR3	F	287	292	Right-handed alpha
Helix 157	AR4	F	296	306	Right-handed alpha
Helix 158	AR5	F	306	317	Right-handed alpha
Helix 159	AR6	F	351	359	Right-handed alpha
Helix 160	AR7	F	380	384	Right-handed 310
Helix 161	AR8	F	399	411	Right-handed alpha
Helix 162	AR9	F	411	418	Right-handed alpha
Helix 163	AS1	F	425	433	Right-handed alpha
Helix 164	AS2	F	437	458	Right-handed alpha
Helix 165	AS3	F	476	484	Right-handed alpha
Helix 166	AS4	F	496	503	Right-handed alpha
Helix 167	AS5	F	511	531	Right-handed alpha
Helix 168	AS6	F	548	559	Right-handed alpha
Helix 169	AS7	F	569	573	Right-handed 310
Helix 170	AS8	F	577	593	Right-handed alpha
Helix 171	AS9	F	604	609	Right-handed alpha
Helix 172	AT1	F	619	630	Right-handed alpha
Helix 173	AT2	F	648	655	Right-handed alpha
Helix 174	AT3	F	672	684	Right-handed alpha
Helix 175	AT4	F	687	699	Right-handed alpha
Helix 176	AT5	F	706	718	Right-handed alpha
Helix 177	AT6	F	724	735	Right-handed alpha
Helix 178	AT7	F	736	736	Right-handed 310
Helix 179	AT8	G	215	219	Right-handed 310
Helix 180	AT9	G	223	235	Right-handed alpha
Helix 181	AU1	G	236	239	Right-handed 310
Helix 182	AU2	G	241	249	Right-handed alpha
Helix 183	AU3	G	265	278	Right-handed alpha
Helix 184	AU4	G	286	292	Right-handed alpha
Helix 185	AU5	G	296	306	Right-handed alpha
Helix 186	AU6	G	306	314	Right-handed alpha
Helix 187	AU7	G	329	333	Right-handed 310
Helix 188	AU8	G	351	359	Right-handed alpha
Helix 189	AU9	G	375	379	Right-handed 310
Helix 190	AV1	G	380	384	Right-handed 310
Helix 191	AV2	G	399	411	Right-handed alpha
Helix 192	AV3	G	411	418	Right-handed alpha
Helix 193	AV4	G	425	433	Right-handed alpha
Helix 194	AV5	G	437	458	Right-handed alpha
Helix 195	AV6	G	476	484	Right-handed alpha
Helix 196	AV7	G	495	503	Right-handed alpha
Helix 197	AV8	G	511	531	Right-handed alpha
Helix 198	AV9	G	548	559	Right-handed alpha
Helix 199	AW1	G	569	573	Right-handed 310
Helix 200	AW2	G	577	592	Right-handed alpha
Helix 201	AW3	G	593	595	Right-handed 310
Helix 202	AW4	G	604	610	Right-handed alpha
Helix 203	AW5	G	619	630	Right-handed alpha
Helix 204	AW6	G	648	655	Right-handed alpha
Helix 205	AW7	G	672	684	Right-handed alpha
Helix 206	AW8	G	687	699	Right-handed alpha
Helix 207	AW9	G	706	718	Right-handed alpha
Helix 208	AX1	G	724	735	Right-handed alpha

There are 15 sheets in PDB entry 9NV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	325	328	parallel
Strand 3	A	369	373	parallel
Strand 4	A	255	259	parallel
Strand 5	A	393	394	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	568	first strand
Strand 2	A	600	602	parallel
Strand 3	A	642	646	parallel
Strand 4	A	538	542	parallel
Strand 5	A	664	666	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	323	326	parallel
Strand 3	B	367	373	parallel
Strand 4	B	255	259	parallel
Strand 5	B	393	394	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	568	first strand
Strand 2	B	599	602	parallel
Strand 3	B	642	646	parallel
Strand 4	B	538	542	parallel
Strand 5	B	663	666	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	323	326	parallel
Strand 3	C	367	373	parallel
Strand 4	C	255	259	parallel
Strand 5	C	393	394	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	566	568	first strand
Strand 2	C	600	602	parallel
Strand 3	C	642	646	parallel
Strand 4	C	538	542	parallel
Strand 5	C	665	666	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	323	327	parallel
Strand 3	D	367	373	parallel
Strand 4	D	255	259	parallel
Strand 5	D	393	394	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	566	568	first strand
Strand 2	D	600	602	parallel
Strand 3	D	642	643	parallel
Strand 4	D	538	542	parallel
Strand 5	D	664	666	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	323	327	parallel
Strand 3	E	367	373	parallel
Strand 4	E	256	259	parallel
Strand 5	E	392	394	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	565	568	first strand
Strand 2	E	599	602	parallel
Strand 3	E	640	646	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	286	first strand
Strand 2	F	323	328	parallel
Strand 3	F	367	373	parallel
Strand 4	F	255	259	parallel
Strand 5	F	392	394	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	566	568	first strand
Strand 2	F	600	602	parallel
Strand 3	F	642	646	parallel
Strand 4	F	538	542	parallel
Strand 5	F	664	666	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	612	612	first strand
Strand 2	F	617	618	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	284	first strand
Strand 2	G	323	326	parallel
Strand 3	G	367	373	parallel
Strand 4	G	255	259	parallel
Strand 5	G	393	394	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	566	568	first strand
Strand 2	G	600	602	parallel
Strand 3	G	642	643	parallel
Strand 4	G	538	542	parallel
Strand 5	G	664	666	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NV9