Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NVD entry

There are 6 chains in PDB entry 9NVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 218	PRO 740
B	ARG 205	PRO 740
C	GLN 206	PRO 740
D	GLN 206	PRO 740
E	SER 207	PRO 740
F	MET 1	GLU 736

There are168 helices in PDB entry 9NVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	223	235	Right-handed alpha
Helix 2	AA2	A	241	249	Right-handed alpha
Helix 3	AA3	A	265	277	Right-handed alpha
Helix 4	AA4	A	287	291	Right-handed 310
Helix 5	AA5	A	297	305	Right-handed alpha
Helix 6	AA6	A	306	317	Right-handed alpha
Helix 7	AA7	A	329	333	Right-handed 310
Helix 8	AA8	A	347	359	Right-handed alpha
Helix 9	AA9	A	380	385	Right-handed 310
Helix 10	AB1	A	399	417	Right-handed alpha
Helix 11	AB2	A	425	433	Right-handed alpha
Helix 12	AB3	A	437	463	Right-handed alpha
Helix 13	AB4	A	466	474	Right-handed alpha
Helix 14	AB5	A	476	484	Right-handed alpha
Helix 15	AB6	A	496	503	Right-handed alpha
Helix 16	AB7	A	511	530	Right-handed alpha
Helix 17	AB8	A	548	561	Right-handed alpha
Helix 18	AB9	A	569	573	Right-handed 310
Helix 19	AC1	A	577	593	Right-handed alpha
Helix 20	AC2	A	604	609	Right-handed alpha
Helix 21	AC3	A	619	630	Right-handed alpha
Helix 22	AC4	A	648	655	Right-handed alpha
Helix 23	AC5	A	672	684	Right-handed alpha
Helix 24	AC6	A	687	698	Right-handed alpha
Helix 25	AC7	A	706	718	Right-handed alpha
Helix 26	AC8	A	725	736	Right-handed alpha
Helix 27	AC9	B	214	219	Right-handed 310
Helix 28	AD1	B	223	235	Right-handed alpha
Helix 29	AD2	B	235	240	Right-handed alpha
Helix 30	AD3	B	241	249	Right-handed alpha
Helix 31	AD4	B	265	277	Right-handed alpha
Helix 32	AD5	B	296	305	Right-handed alpha
Helix 33	AD6	B	306	317	Right-handed alpha
Helix 34	AD7	B	318	320	Right-handed 310
Helix 35	AD8	B	330	333	Right-handed 310
Helix 36	AD9	B	346	359	Right-handed alpha
Helix 37	AE1	B	375	379	Right-handed 310
Helix 38	AE2	B	380	384	Right-handed 310
Helix 39	AE3	B	399	411	Right-handed alpha
Helix 40	AE4	B	412	417	Right-handed alpha
Helix 41	AE5	B	425	433	Right-handed alpha
Helix 42	AE6	B	437	455	Right-handed alpha
Helix 43	AE7	B	476	484	Right-handed alpha
Helix 44	AE8	B	495	503	Right-handed alpha
Helix 45	AE9	B	511	531	Right-handed alpha
Helix 46	AF1	B	548	561	Right-handed alpha
Helix 47	AF2	B	569	573	Right-handed 310
Helix 48	AF3	B	577	593	Right-handed alpha
Helix 49	AF4	B	604	610	Right-handed alpha
Helix 50	AF5	B	619	630	Right-handed alpha
Helix 51	AF6	B	648	655	Right-handed alpha
Helix 52	AF7	B	657	661	Right-handed 310
Helix 53	AF8	B	672	684	Right-handed alpha
Helix 54	AF9	B	687	699	Right-handed alpha
Helix 55	AG1	B	706	718	Right-handed alpha
Helix 56	AG2	B	724	737	Right-handed alpha
Helix 57	AG3	C	214	219	Right-handed alpha
Helix 58	AG4	C	223	240	Right-handed alpha
Helix 59	AG5	C	241	249	Right-handed alpha
Helix 60	AG6	C	265	276	Right-handed alpha
Helix 61	AG7	C	296	305	Right-handed alpha
Helix 62	AG8	C	306	317	Right-handed alpha
Helix 63	AG9	C	318	320	Right-handed 310
Helix 64	AH1	C	329	333	Right-handed 310
Helix 65	AH2	C	348	359	Right-handed alpha
Helix 66	AH3	C	380	385	Right-handed 310
Helix 67	AH4	C	399	417	Right-handed alpha
Helix 68	AH5	C	425	433	Right-handed alpha
Helix 69	AH6	C	437	455	Right-handed alpha
Helix 70	AH7	C	467	472	Right-handed 310
Helix 71	AH8	C	476	484	Right-handed alpha
Helix 72	AH9	C	511	530	Right-handed alpha
Helix 73	AI1	C	548	561	Right-handed alpha
Helix 74	AI2	C	569	573	Right-handed 310
Helix 75	AI3	C	577	592	Right-handed alpha
Helix 76	AI4	C	593	595	Right-handed 310
Helix 77	AI5	C	604	609	Right-handed alpha
Helix 78	AI6	C	619	630	Right-handed alpha
Helix 79	AI7	C	648	655	Right-handed alpha
Helix 80	AI8	C	673	684	Right-handed alpha
Helix 81	AI9	C	687	699	Right-handed alpha
Helix 82	AJ1	C	706	719	Right-handed alpha
Helix 83	AJ2	C	724	737	Right-handed alpha
Helix 84	AJ3	D	214	219	Right-handed 310
Helix 85	AJ4	D	223	240	Right-handed alpha
Helix 86	AJ5	D	241	249	Right-handed alpha
Helix 87	AJ6	D	265	277	Right-handed alpha
Helix 88	AJ7	D	296	317	Right-handed alpha
Helix 89	AJ8	D	330	333	Right-handed 310
Helix 90	AJ9	D	343	359	Right-handed alpha
Helix 91	AK1	D	375	379	Right-handed 310
Helix 92	AK2	D	380	385	Right-handed 310
Helix 93	AK3	D	399	417	Right-handed alpha
Helix 94	AK4	D	425	433	Right-handed alpha
Helix 95	AK5	D	437	455	Right-handed alpha
Helix 96	AK6	D	476	484	Right-handed alpha
Helix 97	AK7	D	495	503	Right-handed alpha
Helix 98	AK8	D	511	531	Right-handed alpha
Helix 99	AK9	D	548	561	Right-handed alpha
Helix 100	AL1	D	569	573	Right-handed 310
Helix 101	AL2	D	577	595	Right-handed alpha
Helix 102	AL3	D	604	609	Right-handed alpha
Helix 103	AL4	D	619	630	Right-handed alpha
Helix 104	AL5	D	648	656	Right-handed alpha
Helix 105	AL6	D	657	661	Right-handed 310
Helix 106	AL7	D	672	684	Right-handed alpha
Helix 107	AL8	D	687	699	Right-handed alpha
Helix 108	AL9	D	706	719	Right-handed alpha
Helix 109	AM1	D	720	723	Right-handed 310
Helix 110	AM2	D	724	737	Right-handed alpha
Helix 111	AM3	E	214	219	Right-handed 310
Helix 112	AM4	E	223	240	Right-handed alpha
Helix 113	AM5	E	241	249	Right-handed alpha
Helix 114	AM6	E	265	277	Right-handed alpha
Helix 115	AM7	E	296	317	Right-handed alpha
Helix 116	AM8	E	318	320	Right-handed 310
Helix 117	AM9	E	329	334	Right-handed alpha
Helix 118	AN1	E	344	359	Right-handed alpha
Helix 119	AN2	E	375	379	Right-handed 310
Helix 120	AN3	E	380	384	Right-handed 310
Helix 121	AN4	E	399	417	Right-handed alpha
Helix 122	AN5	E	425	433	Right-handed alpha
Helix 123	AN6	E	437	455	Right-handed alpha
Helix 124	AN7	E	476	484	Right-handed alpha
Helix 125	AN8	E	498	503	Right-handed alpha
Helix 126	AN9	E	511	530	Right-handed alpha
Helix 127	AO1	E	548	560	Right-handed alpha
Helix 128	AO2	E	569	573	Right-handed 310
Helix 129	AO3	E	577	594	Right-handed alpha
Helix 130	AO4	E	604	609	Right-handed alpha
Helix 131	AO5	E	619	632	Right-handed alpha
Helix 132	AO6	E	648	655	Right-handed alpha
Helix 133	AO7	E	673	684	Right-handed alpha
Helix 134	AO8	E	687	699	Right-handed alpha
Helix 135	AO9	E	706	718	Right-handed alpha
Helix 136	AP1	E	724	737	Right-handed alpha
Helix 137	AP2	F	13	19	Right-handed alpha
Helix 138	AP3	F	63	71	Right-handed alpha
Helix 139	AP4	F	103	107	Right-handed 310
Helix 140	AP5	F	114	125	Right-handed alpha
Helix 141	AP6	F	156	161	Right-handed alpha
Helix 142	AP7	F	226	236	Right-handed alpha
Helix 143	AP8	F	237	240	Right-handed 310
Helix 144	AP9	F	241	249	Right-handed alpha
Helix 145	AQ1	F	264	277	Right-handed alpha
Helix 146	AQ2	F	297	306	Right-handed alpha
Helix 147	AQ3	F	306	317	Right-handed alpha
Helix 148	AQ4	F	330	333	Right-handed 310
Helix 149	AQ5	F	351	359	Right-handed alpha
Helix 150	AQ6	F	375	379	Right-handed 310
Helix 151	AQ7	F	381	385	Right-handed 310
Helix 152	AQ8	F	399	417	Right-handed alpha
Helix 153	AQ9	F	425	433	Right-handed alpha
Helix 154	AR1	F	437	454	Right-handed alpha
Helix 155	AR2	F	455	457	Right-handed 310
Helix 156	AR3	F	476	484	Right-handed alpha
Helix 157	AR4	F	499	503	Right-handed 310
Helix 158	AR5	F	511	530	Right-handed alpha
Helix 159	AR6	F	548	561	Right-handed alpha
Helix 160	AR7	F	569	573	Right-handed 310
Helix 161	AR8	F	577	594	Right-handed alpha
Helix 162	AR9	F	604	609	Right-handed alpha
Helix 163	AS1	F	619	630	Right-handed alpha
Helix 164	AS2	F	648	655	Right-handed alpha
Helix 165	AS3	F	672	684	Right-handed alpha
Helix 166	AS4	F	687	699	Right-handed alpha
Helix 167	AS5	F	706	719	Right-handed alpha
Helix 168	AS6	F	724	736	Right-handed alpha

There are 21 sheets in PDB entry 9NVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	324	327	parallel
Strand 3	A	368	373	parallel
Strand 4	A	255	259	parallel
Strand 5	A	391	394	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	568	first strand
Strand 2	A	597	602	parallel
Strand 3	A	639	645	parallel
Strand 4	A	536	542	parallel
Strand 5	A	664	666	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	323	328	parallel
Strand 3	B	367	373	parallel
Strand 4	B	255	259	parallel
Strand 5	B	389	394	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	537	first strand
Strand 2	B	639	645	parallel
Strand 3	B	540	541	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	537	first strand
Strand 2	B	639	645	parallel
Strand 3	B	597	602	parallel
Strand 4	B	564	568	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	323	327	parallel
Strand 3	C	367	373	parallel
Strand 4	C	256	259	parallel
Strand 5	C	391	394	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	568	first strand
Strand 2	C	597	602	parallel
Strand 3	C	639	645	parallel
Strand 4	C	536	542	parallel
Strand 5	C	663	666	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	670	672	first strand
Strand 2	C	702	705	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	323	328	parallel
Strand 3	D	367	373	parallel
Strand 4	D	256	259	parallel
Strand 5	D	391	394	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	458	first strand
Strand 2	D	465	466	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	597	602	parallel
Strand 3	D	639	646	parallel
Strand 4	D	536	542	parallel
Strand 5	D	663	666	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	323	328	parallel
Strand 3	E	367	372	parallel
Strand 4	E	255	259	parallel
Strand 5	E	392	394	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	458	first strand
Strand 2	E	465	466	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	568	first strand
Strand 2	E	597	603	parallel
Strand 3	E	639	646	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	670	672	first strand
Strand 2	E	702	705	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	F	59	62	anti-parallel
Strand 3	F	4	10	parallel
Strand 4	F	77	80	anti-parallel
Strand 5	F	34	40	anti-parallel
Strand 6	F	43	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	140	first strand
Strand 2	F	143	154	anti-parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	183	187	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	131	first strand
Strand 2	F	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	286	first strand
Strand 2	F	323	328	parallel
Strand 3	F	367	373	parallel
Strand 4	F	255	259	parallel
Strand 5	F	391	394	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	597	602	parallel
Strand 3	F	639	645	parallel
Strand 4	F	536	542	parallel
Strand 5	F	663	666	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	611	612	first strand
Strand 2	F	617	618	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVD