Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NVL entry

There are 7 chains in PDB entry 9NVL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	THR 499
B	SER 26	PHE 500
C	SER 26	ALA 498
D	THR 2	LYS 470
E	THR 2	LYS 471
F	THR 2	LYS 469
G	SER 6	LEU 287

There are133 helices in PDB entry 9NVL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	82	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	150	157	Right-handed alpha
Helix 4	AA4	A	174	186	Right-handed alpha
Helix 5	AA5	A	201	215	Right-handed alpha
Helix 6	AA6	A	216	219	Right-handed 310
Helix 7	AA7	A	231	252	Right-handed alpha
Helix 8	AA8	A	262	277	Right-handed alpha
Helix 9	AA9	A	282	286	Right-handed 310
Helix 10	AB1	A	287	288	Right-handed 310
Helix 11	AB2	A	289	299	Right-handed alpha
Helix 12	AB3	A	322	325	Right-handed 310
Helix 13	AB4	A	328	336	Right-handed alpha
Helix 14	AB5	A	345	351	Right-handed alpha
Helix 15	AB6	A	372	396	Right-handed alpha
Helix 16	AB7	A	403	421	Right-handed alpha
Helix 17	AB8	A	429	442	Right-handed alpha
Helix 18	AB9	A	449	451	Right-handed 310
Helix 19	AC1	A	452	468	Right-handed alpha
Helix 20	AC2	A	468	479	Right-handed alpha
Helix 21	AC3	A	484	498	Right-handed alpha
Helix 22	AC4	B	78	82	Right-handed 310
Helix 23	AC5	B	100	104	Right-handed 310
Helix 24	AC6	B	150	157	Right-handed alpha
Helix 25	AC7	B	174	186	Right-handed alpha
Helix 26	AC8	B	201	215	Right-handed alpha
Helix 27	AC9	B	216	219	Right-handed 310
Helix 28	AD1	B	231	252	Right-handed alpha
Helix 29	AD2	B	262	277	Right-handed alpha
Helix 30	AD3	B	282	286	Right-handed 310
Helix 31	AD4	B	287	288	Right-handed 310
Helix 32	AD5	B	289	299	Right-handed alpha
Helix 33	AD6	B	328	336	Right-handed alpha
Helix 34	AD7	B	345	351	Right-handed alpha
Helix 35	AD8	B	372	380	Right-handed alpha
Helix 36	AD9	B	381	396	Right-handed alpha
Helix 37	AE1	B	403	421	Right-handed alpha
Helix 38	AE2	B	429	442	Right-handed alpha
Helix 39	AE3	B	449	451	Right-handed 310
Helix 40	AE4	B	452	468	Right-handed alpha
Helix 41	AE5	B	468	479	Right-handed alpha
Helix 42	AE6	B	484	497	Right-handed alpha
Helix 43	AE7	C	78	82	Right-handed 310
Helix 44	AE8	C	100	104	Right-handed 310
Helix 45	AE9	C	150	157	Right-handed alpha
Helix 46	AF1	C	174	186	Right-handed alpha
Helix 47	AF2	C	201	215	Right-handed alpha
Helix 48	AF3	C	216	219	Right-handed 310
Helix 49	AF4	C	231	252	Right-handed alpha
Helix 50	AF5	C	262	277	Right-handed alpha
Helix 51	AF6	C	282	286	Right-handed 310
Helix 52	AF7	C	287	288	Right-handed 310
Helix 53	AF8	C	289	299	Right-handed alpha
Helix 54	AF9	C	328	338	Right-handed alpha
Helix 55	AG1	C	345	352	Right-handed alpha
Helix 56	AG2	C	372	394	Right-handed alpha
Helix 57	AG3	C	403	421	Right-handed alpha
Helix 58	AG4	C	429	442	Right-handed alpha
Helix 59	AG5	C	452	467	Right-handed alpha
Helix 60	AG6	C	469	479	Right-handed alpha
Helix 61	AG7	C	484	496	Right-handed alpha
Helix 62	AG8	D	88	92	Right-handed 310
Helix 63	AG9	D	140	145	Right-handed alpha
Helix 64	AH1	D	162	177	Right-handed alpha
Helix 65	AH2	D	190	205	Right-handed alpha
Helix 66	AH3	D	206	208	Right-handed 310
Helix 67	AH4	D	220	241	Right-handed alpha
Helix 68	AH5	D	252	268	Right-handed alpha
Helix 69	AH6	D	272	276	Right-handed 310
Helix 70	AH7	D	279	289	Right-handed alpha
Helix 71	AH8	D	308	311	Right-handed 310
Helix 72	AH9	D	314	321	Right-handed alpha
Helix 73	AI1	D	322	324	Right-handed 310
Helix 74	AI2	D	331	336	Right-handed alpha
Helix 75	AI3	D	359	378	Right-handed alpha
Helix 76	AI4	D	379	386	Right-handed alpha
Helix 77	AI5	D	387	391	Right-handed 310
Helix 78	AI6	D	392	409	Right-handed alpha
Helix 79	AI7	D	413	415	Right-handed 310
Helix 80	AI8	D	416	421	Right-handed alpha
Helix 81	AI9	D	428	441	Right-handed alpha
Helix 82	AJ1	D	448	453	Right-handed 310
Helix 83	AJ2	D	457	468	Right-handed alpha
Helix 84	AJ3	E	88	92	Right-handed 310
Helix 85	AJ4	E	123	127	Right-handed 310
Helix 86	AJ5	E	140	145	Right-handed alpha
Helix 87	AJ6	E	162	177	Right-handed alpha
Helix 88	AJ7	E	190	204	Right-handed alpha
Helix 89	AJ8	E	205	208	Right-handed 310
Helix 90	AJ9	E	220	241	Right-handed alpha
Helix 91	AK1	E	252	268	Right-handed alpha
Helix 92	AK2	E	272	276	Right-handed 310
Helix 93	AK3	E	279	289	Right-handed alpha
Helix 94	AK4	E	307	311	Right-handed 310
Helix 95	AK5	E	314	321	Right-handed alpha
Helix 96	AK6	E	331	337	Right-handed alpha
Helix 97	AK7	E	359	378	Right-handed alpha
Helix 98	AK8	E	379	386	Right-handed alpha
Helix 99	AK9	E	387	391	Right-handed 310
Helix 100	AL1	E	392	409	Right-handed alpha
Helix 101	AL2	E	413	415	Right-handed 310
Helix 102	AL3	E	416	421	Right-handed alpha
Helix 103	AL4	E	428	441	Right-handed alpha
Helix 104	AL5	E	448	453	Right-handed 310
Helix 105	AL6	E	457	468	Right-handed alpha
Helix 106	AL7	F	88	92	Right-handed 310
Helix 107	AL8	F	123	127	Right-handed 310
Helix 108	AL9	F	140	145	Right-handed alpha
Helix 109	AM1	F	162	175	Right-handed alpha
Helix 110	AM2	F	190	205	Right-handed alpha
Helix 111	AM3	F	206	208	Right-handed 310
Helix 112	AM4	F	220	241	Right-handed alpha
Helix 113	AM5	F	253	268	Right-handed alpha
Helix 114	AM6	F	272	276	Right-handed 310
Helix 115	AM7	F	279	289	Right-handed alpha
Helix 116	AM8	F	308	311	Right-handed 310
Helix 117	AM9	F	314	321	Right-handed alpha
Helix 118	AN1	F	322	324	Right-handed 310
Helix 119	AN2	F	331	336	Right-handed alpha
Helix 120	AN3	F	359	378	Right-handed alpha
Helix 121	AN4	F	381	386	Right-handed alpha
Helix 122	AN5	F	387	391	Right-handed 310
Helix 123	AN6	F	392	409	Right-handed alpha
Helix 124	AN7	F	413	415	Right-handed 310
Helix 125	AN8	F	416	421	Right-handed alpha
Helix 126	AN9	F	428	441	Right-handed alpha
Helix 127	AO1	F	448	453	Right-handed 310
Helix 128	AO2	F	457	467	Right-handed alpha
Helix 129	AO3	G	7	62	Right-handed alpha
Helix 130	AO4	G	93	108	Right-handed alpha
Helix 131	AO5	G	122	132	Right-handed alpha
Helix 132	AO6	G	148	165	Right-handed alpha
Helix 133	AO7	G	211	286	Right-handed alpha

There are 20 sheets in PDB entry 9NVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	34	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	51	55	anti-parallel
Strand 6	A	87	94	anti-parallel
Strand 7	A	28	34	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	221	227	parallel
Strand 3	A	191	200	parallel
Strand 4	A	255	260	parallel
Strand 5	A	312	320	parallel
Strand 6	A	166	169	parallel
Strand 7	A	340	344	parallel
Strand 8	A	363	364	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	66	first strand
Strand 2	B	51	55	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	28	34	anti-parallel
Strand 5	B	38	43	anti-parallel
Strand 6	B	70	75	anti-parallel
Strand 7	B	60	66	anti-parallel
Strand 8	F	4	10	anti-parallel
Strand 9	F	75	82	anti-parallel
Strand 10	F	28	34	anti-parallel
Strand 11	F	44	55	anti-parallel
Strand 12	F	58	63	anti-parallel
Strand 13	F	13	18	anti-parallel
Strand 14	F	4	10	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	221	226	parallel
Strand 3	B	191	198	parallel
Strand 4	B	255	260	parallel
Strand 5	B	312	321	parallel
Strand 6	B	166	170	parallel
Strand 7	B	340	344	parallel
Strand 8	B	363	364	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	34	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	52	55	anti-parallel
Strand 6	C	87	90	anti-parallel
Strand 7	C	28	34	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	221	227	parallel
Strand 3	C	191	200	parallel
Strand 4	C	255	260	parallel
Strand 5	C	312	320	parallel
Strand 6	C	166	169	parallel
Strand 7	C	340	344	parallel
Strand 8	C	363	364	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	10	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	44	55	anti-parallel
Strand 5	D	29	34	anti-parallel
Strand 6	D	75	78	anti-parallel
Strand 7	D	3	10	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	113	116	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	210	213	parallel
Strand 3	D	182	185	parallel
Strand 4	D	245	250	parallel
Strand 5	D	298	306	parallel
Strand 6	D	152	157	parallel
Strand 7	D	326	329	parallel
Strand 8	D	349	350	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	147	148	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	10	first strand
Strand 2	E	13	17	anti-parallel
Strand 3	E	58	63	anti-parallel
Strand 4	E	44	55	anti-parallel
Strand 5	E	29	34	anti-parallel
Strand 6	E	75	78	anti-parallel
Strand 7	E	3	10	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	87	first strand
Strand 2	E	113	116	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	210	216	parallel
Strand 3	E	182	189	parallel
Strand 4	E	245	250	parallel
Strand 5	E	298	305	parallel
Strand 6	E	152	156	parallel
Strand 7	E	326	329	parallel
Strand 8	E	349	350	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	87	first strand
Strand 2	F	113	116	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	147	148	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	212	first strand
Strand 2	F	181	184	parallel
Strand 3	F	245	250	parallel
Strand 4	F	298	306	parallel
Strand 5	F	152	157	parallel
Strand 6	F	326	329	parallel
Strand 7	F	349	350	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	140	first strand
Strand 2	G	117	121	parallel
Strand 3	G	79	84	parallel
Strand 4	G	170	177	parallel
Strand 5	G	185	192	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NVL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVL