Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NVM entry

There are 7 chains in PDB entry 9NVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	LYS 501
B	ASP 27	LYS 501
C	ASP 27	LYS 501
D	THR 2	LYS 470
E	MET 1	MET 468
F	MET 1	LYS 470
G	SER 6	LEU 287

There are125 helices in PDB entry 9NVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	104	Right-handed 310
Helix 2	AA2	A	150	157	Right-handed alpha
Helix 3	AA3	A	175	186	Right-handed alpha
Helix 4	AA4	A	201	215	Right-handed alpha
Helix 5	AA5	A	216	219	Right-handed 310
Helix 6	AA6	A	231	251	Right-handed alpha
Helix 7	AA7	A	262	277	Right-handed alpha
Helix 8	AA8	A	282	286	Right-handed 310
Helix 9	AA9	A	287	288	Right-handed 310
Helix 10	AB1	A	289	299	Right-handed alpha
Helix 11	AB2	A	305	309	Right-handed 310
Helix 12	AB3	A	322	325	Right-handed 310
Helix 13	AB4	A	328	338	Right-handed alpha
Helix 14	AB5	A	345	350	Right-handed alpha
Helix 15	AB6	A	372	397	Right-handed alpha
Helix 16	AB7	A	403	420	Right-handed alpha
Helix 17	AB8	A	429	442	Right-handed alpha
Helix 18	AB9	A	452	478	Right-handed alpha
Helix 19	AC1	A	484	501	Right-handed alpha
Helix 20	AC2	B	100	104	Right-handed 310
Helix 21	AC3	B	150	157	Right-handed alpha
Helix 22	AC4	B	174	186	Right-handed alpha
Helix 23	AC5	B	201	215	Right-handed alpha
Helix 24	AC6	B	216	219	Right-handed 310
Helix 25	AC7	B	231	253	Right-handed alpha
Helix 26	AC8	B	262	277	Right-handed alpha
Helix 27	AC9	B	289	299	Right-handed alpha
Helix 28	AD1	B	305	309	Right-handed 310
Helix 29	AD2	B	322	325	Right-handed 310
Helix 30	AD3	B	328	338	Right-handed alpha
Helix 31	AD4	B	345	351	Right-handed alpha
Helix 32	AD5	B	372	380	Right-handed alpha
Helix 33	AD6	B	381	399	Right-handed alpha
Helix 34	AD7	B	403	420	Right-handed alpha
Helix 35	AD8	B	429	442	Right-handed alpha
Helix 36	AD9	B	449	451	Right-handed 310
Helix 37	AE1	B	452	464	Right-handed alpha
Helix 38	AE2	B	465	467	Right-handed 310
Helix 39	AE3	B	468	479	Right-handed alpha
Helix 40	AE4	B	483	500	Right-handed alpha
Helix 41	AE5	C	100	104	Right-handed 310
Helix 42	AE6	C	150	157	Right-handed alpha
Helix 43	AE7	C	174	185	Right-handed alpha
Helix 44	AE8	C	201	215	Right-handed alpha
Helix 45	AE9	C	216	219	Right-handed 310
Helix 46	AF1	C	231	253	Right-handed alpha
Helix 47	AF2	C	262	277	Right-handed alpha
Helix 48	AF3	C	289	299	Right-handed alpha
Helix 49	AF4	C	305	309	Right-handed 310
Helix 50	AF5	C	322	325	Right-handed 310
Helix 51	AF6	C	328	338	Right-handed alpha
Helix 52	AF7	C	345	351	Right-handed alpha
Helix 53	AF8	C	372	380	Right-handed alpha
Helix 54	AF9	C	381	400	Right-handed alpha
Helix 55	AG1	C	403	420	Right-handed alpha
Helix 56	AG2	C	429	442	Right-handed alpha
Helix 57	AG3	C	449	451	Right-handed 310
Helix 58	AG4	C	452	465	Right-handed alpha
Helix 59	AG5	C	469	479	Right-handed alpha
Helix 60	AG6	C	483	498	Right-handed alpha
Helix 61	AG7	D	88	92	Right-handed 310
Helix 62	AG8	D	123	127	Right-handed 310
Helix 63	AG9	D	138	145	Right-handed alpha
Helix 64	AH1	D	162	172	Right-handed alpha
Helix 65	AH2	D	174	178	Right-handed 310
Helix 66	AH3	D	190	205	Right-handed alpha
Helix 67	AH4	D	206	208	Right-handed 310
Helix 68	AH5	D	220	241	Right-handed alpha
Helix 69	AH6	D	252	268	Right-handed alpha
Helix 70	AH7	D	272	276	Right-handed 310
Helix 71	AH8	D	279	289	Right-handed alpha
Helix 72	AH9	D	314	321	Right-handed alpha
Helix 73	AI1	D	322	324	Right-handed 310
Helix 74	AI2	D	331	336	Right-handed alpha
Helix 75	AI3	D	359	387	Right-handed alpha
Helix 76	AI4	D	388	391	Right-handed 310
Helix 77	AI5	D	392	409	Right-handed alpha
Helix 78	AI6	D	413	415	Right-handed 310
Helix 79	AI7	D	416	421	Right-handed alpha
Helix 80	AI8	D	428	441	Right-handed alpha
Helix 81	AI9	D	448	452	Right-handed 310
Helix 82	AJ1	D	457	468	Right-handed alpha
Helix 83	AJ2	E	88	92	Right-handed 310
Helix 84	AJ3	E	138	145	Right-handed alpha
Helix 85	AJ4	E	162	177	Right-handed alpha
Helix 86	AJ5	E	190	204	Right-handed alpha
Helix 87	AJ6	E	205	208	Right-handed 310
Helix 88	AJ7	E	220	241	Right-handed alpha
Helix 89	AJ8	E	252	268	Right-handed alpha
Helix 90	AJ9	E	272	276	Right-handed 310
Helix 91	AK1	E	279	289	Right-handed alpha
Helix 92	AK2	E	314	322	Right-handed alpha
Helix 93	AK3	E	331	338	Right-handed alpha
Helix 94	AK4	E	352	354	Right-handed 310
Helix 95	AK5	E	359	386	Right-handed alpha
Helix 96	AK6	E	387	391	Right-handed 310
Helix 97	AK7	E	392	409	Right-handed alpha
Helix 98	AK8	E	414	419	Right-handed 310
Helix 99	AK9	E	428	441	Right-handed alpha
Helix 100	AL1	E	448	452	Right-handed 310
Helix 101	AL2	E	457	468	Right-handed alpha
Helix 102	AL3	F	88	92	Right-handed 310
Helix 103	AL4	F	138	145	Right-handed alpha
Helix 104	AL5	F	162	174	Right-handed alpha
Helix 105	AL6	F	175	177	Right-handed 310
Helix 106	AL7	F	190	205	Right-handed alpha
Helix 107	AL8	F	206	208	Right-handed 310
Helix 108	AL9	F	220	242	Right-handed alpha
Helix 109	AM1	F	252	268	Right-handed alpha
Helix 110	AM2	F	279	289	Right-handed alpha
Helix 111	AM3	F	314	321	Right-handed alpha
Helix 112	AM4	F	322	324	Right-handed 310
Helix 113	AM5	F	331	338	Right-handed alpha
Helix 114	AM6	F	359	387	Right-handed alpha
Helix 115	AM7	F	393	409	Right-handed alpha
Helix 116	AM8	F	428	442	Right-handed alpha
Helix 117	AM9	F	448	453	Right-handed 310
Helix 118	AN1	F	457	469	Right-handed alpha
Helix 119	AN2	G	7	62	Right-handed alpha
Helix 120	AN3	G	88	92	Right-handed 310
Helix 121	AN4	G	93	110	Right-handed alpha
Helix 122	AN5	G	112	114	Right-handed 310
Helix 123	AN6	G	122	131	Right-handed alpha
Helix 124	AN7	G	152	165	Right-handed alpha
Helix 125	AN8	G	211	287	Right-handed alpha

There are 21 sheets in PDB entry 9NVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	35	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	51	55	anti-parallel
Strand 6	A	87	94	anti-parallel
Strand 7	A	28	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	221	226	parallel
Strand 3	A	191	198	parallel
Strand 4	A	255	260	parallel
Strand 5	A	312	320	parallel
Strand 6	A	166	169	parallel
Strand 7	A	340	344	parallel
Strand 8	A	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	35	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	71	75	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	B	51	55	anti-parallel
Strand 6	B	87	94	anti-parallel
Strand 7	B	28	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	221	226	parallel
Strand 3	B	191	198	parallel
Strand 4	B	255	260	parallel
Strand 5	B	312	320	parallel
Strand 6	B	166	169	parallel
Strand 7	B	340	343	parallel
Strand 8	B	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	35	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	51	55	anti-parallel
Strand 6	C	87	94	anti-parallel
Strand 7	C	28	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	221	226	parallel
Strand 3	C	191	198	parallel
Strand 4	C	255	260	parallel
Strand 5	C	312	320	parallel
Strand 6	C	166	169	parallel
Strand 7	C	340	344	parallel
Strand 8	C	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	10	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	44	53	anti-parallel
Strand 5	D	29	34	anti-parallel
Strand 6	D	75	78	anti-parallel
Strand 7	D	4	10	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	113	116	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	210	213	parallel
Strand 3	D	181	186	parallel
Strand 4	D	246	251	parallel
Strand 5	D	299	306	parallel
Strand 6	D	152	157	parallel
Strand 7	D	326	329	parallel
Strand 8	D	349	350	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	10	first strand
Strand 2	E	13	17	anti-parallel
Strand 3	E	58	63	anti-parallel
Strand 4	E	44	55	anti-parallel
Strand 5	E	29	34	anti-parallel
Strand 6	E	75	78	anti-parallel
Strand 7	E	3	10	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	87	first strand
Strand 2	E	113	116	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	210	216	parallel
Strand 3	E	182	189	parallel
Strand 4	E	246	250	parallel
Strand 5	E	299	304	parallel
Strand 6	E	152	157	parallel
Strand 7	E	326	330	parallel
Strand 8	E	349	350	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	10	first strand
Strand 2	F	13	17	anti-parallel
Strand 3	F	58	63	anti-parallel
Strand 4	F	44	55	anti-parallel
Strand 5	F	29	34	anti-parallel
Strand 6	F	75	78	anti-parallel
Strand 7	F	3	10	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	87	first strand
Strand 2	F	113	116	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	210	216	parallel
Strand 3	F	182	189	parallel
Strand 4	F	246	250	parallel
Strand 5	F	299	306	parallel
Strand 6	F	152	157	parallel
Strand 7	F	326	329	parallel
Strand 8	F	349	350	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	140	first strand
Strand 2	G	116	121	parallel
Strand 3	G	79	84	parallel
Strand 4	G	170	178	parallel
Strand 5	G	184	192	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVM