Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NVU entry

There are 4 chains in PDB entry 9NVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	A -11	A 15
P	ARG 1	ALA 603
T	T -15	C 23
W	G -21	A 191

There are 22 helices in PDB entry 9NVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	18	28	Right-handed alpha
Helix 2	AA2	P	86	88	Right-handed 310
Helix 3	AA3	P	89	120	Right-handed alpha
Helix 4	AA4	P	171	181	Right-handed alpha
Helix 5	AA5	P	186	200	Right-handed alpha
Helix 6	AA6	P	201	217	Right-handed alpha
Helix 7	AA7	P	226	233	Right-handed alpha
Helix 8	AA8	P	245	250	Right-handed alpha
Helix 9	AA9	P	253	257	Right-handed 310
Helix 10	AB1	P	266	284	Right-handed alpha
Helix 11	AB2	P	300	305	Right-handed alpha
Helix 12	AB3	P	310	314	Right-handed 310
Helix 13	AB4	P	326	335	Right-handed alpha
Helix 14	AB5	P	355	359	Right-handed 310
Helix 15	AB6	P	363	365	Right-handed 310
Helix 16	AB7	P	371	381	Right-handed alpha
Helix 17	AB8	P	381	392	Right-handed alpha
Helix 18	AB9	P	399	420	Right-handed alpha
Helix 19	AC1	P	429	439	Right-handed alpha
Helix 20	AC2	P	444	454	Right-handed alpha
Helix 21	AC3	P	511	524	Right-handed alpha
Helix 22	AC4	P	524	533	Right-handed alpha

There are 6 sheets in PDB entry 9NVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	6	first strand
Strand 2	P	40	43	parallel
Strand 3	P	31	35	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	424	428	first strand
Strand 2	P	289	296	parallel
Strand 3	P	55	60	parallel
Strand 4	P	65	72	anti-parallel
Strand 5	P	77	84	anti-parallel
Strand 6	P	469	473	parallel
Strand 7	P	599	602	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	349	352	first strand
Strand 2	P	367	370	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	482	485	first strand
Strand 2	P	542	544	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	495	498	first strand
Strand 2	P	489	492	anti-parallel
Strand 3	P	536	538	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	585	586	first strand
Strand 2	P	574	577	anti-parallel
Strand 3	P	561	569	anti-parallel
Strand 4	P	555	558	anti-parallel
Strand 5	P	590	594	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVU