Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NVZ entry

There are 9 chains in PDB entry 9NVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	ASP 112
H	ASN 115	PRO 138
L	ASP 1	LYS 108
b	ASN 33	ARG 503
c	ARG 519	LEU 661
d	ASN 33	ARG 503
e	ARG 519	LEU 661
f	ASN 33	ARG 503
g	ARG 519	LEU 661

There are 47 helices in PDB entry 9NVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	29	33	Right-handed 310
Helix 2	AA2	H	89	93	Right-handed 310
Helix 3	AA3	H	112	116	Right-handed 310
Helix 4	AA4	L	80	84	Right-handed 310
Helix 5	AA5	b	70	74	Right-handed 310
Helix 6	AA6	b	98	117	Right-handed alpha
Helix 7	AA7	b	122	126	Right-handed 310
Helix 8	AA8	b	334	339	Right-handed alpha
Helix 9	AA9	b	341	351	Right-handed alpha
Helix 10	AB1	b	368	373	Right-handed alpha
Helix 11	AB2	b	387	390	Right-handed 310
Helix 12	AB3	b	475	484	Right-handed alpha
Helix 13	AB4	c	529	534	Right-handed alpha
Helix 14	AB5	c	536	542	Right-handed alpha
Helix 15	AB6	c	543	546	Right-handed 310
Helix 16	AB7	c	569	596	Right-handed alpha
Helix 17	AB8	c	619	624	Right-handed alpha
Helix 18	AB9	c	627	636	Right-handed alpha
Helix 19	AC1	c	638	658	Right-handed alpha
Helix 20	AC2	d	70	74	Right-handed 310
Helix 21	AC3	d	98	116	Right-handed alpha
Helix 22	AC4	d	122	126	Right-handed 310
Helix 23	AC5	d	334	351	Right-handed alpha
Helix 24	AC6	d	368	373	Right-handed alpha
Helix 25	AC7	d	387	390	Right-handed 310
Helix 26	AC8	d	475	484	Right-handed alpha
Helix 27	AC9	e	523	527	Right-handed 310
Helix 28	AD1	e	529	534	Right-handed alpha
Helix 29	AD2	e	536	542	Right-handed alpha
Helix 30	AD3	e	569	597	Right-handed alpha
Helix 31	AD4	e	619	624	Right-handed alpha
Helix 32	AD5	e	627	633	Right-handed alpha
Helix 33	AD6	e	635	658	Right-handed alpha
Helix 34	AD7	f	70	74	Right-handed 310
Helix 35	AD8	f	98	117	Right-handed alpha
Helix 36	AD9	f	122	126	Right-handed 310
Helix 37	AE1	f	334	351	Right-handed alpha
Helix 38	AE2	f	368	373	Right-handed alpha
Helix 39	AE3	f	387	390	Right-handed 310
Helix 40	AE4	f	475	481	Right-handed alpha
Helix 41	AE5	f	482	484	Right-handed 310
Helix 42	AE6	g	529	534	Right-handed alpha
Helix 43	AE7	g	536	542	Right-handed alpha
Helix 44	AE8	g	569	596	Right-handed alpha
Helix 45	AE9	g	618	625	Right-handed alpha
Helix 46	AF1	g	627	636	Right-handed alpha
Helix 47	AF2	g	638	658	Right-handed alpha

There are 31 sheets in PDB entry 9NVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	132	136	parallel
Strand 3	H	94	102	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	132	136	parallel
Strand 3	H	94	102	anti-parallel
Strand 4	H	124	128	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	105	106	first strand
Strand 2	H	118	119	anti-parallel
Strand 3	f	168	177	parallel
Strand 4	f	154	162	anti-parallel
Strand 5	f	129	132	anti-parallel
Strand 6	f	190	193	anti-parallel
Strand 7	f	181	183	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	494	499	first strand
Strand 2	b	35	40	anti-parallel
Strand 3	c	603	609	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	45	47	first strand
Strand 2	b	486	491	anti-parallel
Strand 3	b	223	228	anti-parallel
Strand 4	b	242	245	anti-parallel
Strand 5	b	84	86	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	91	94	first strand
Strand 2	b	236	239	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	169	177	first strand
Strand 2	b	154	162	anti-parallel
Strand 3	b	129	132	anti-parallel
Strand 4	b	190	193	anti-parallel
Strand 5	b	181	183	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	202	203	first strand
Strand 2	b	434	435	parallel
Strand 3	b	423	424	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	259	261	first strand
Strand 2	b	443	456	anti-parallel
Strand 3	b	284	298	anti-parallel
Strand 4	b	330	333	anti-parallel
Strand 5	b	414	421	anti-parallel
Strand 6	b	382	385	anti-parallel
Strand 7	b	374	377	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	271	273	first strand
Strand 2	b	284	298	anti-parallel
Strand 3	b	443	456	anti-parallel
Strand 4	b	465	470	anti-parallel
Strand 5	b	357	361	parallel
Strand 6	b	393	395	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	302	312	first strand
Strand 2	b	315	323	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	494	499	first strand
Strand 2	d	35	40	anti-parallel
Strand 3	e	603	609	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	45	47	first strand
Strand 2	d	486	491	anti-parallel
Strand 3	d	223	228	anti-parallel
Strand 4	d	242	245	anti-parallel
Strand 5	d	84	85	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	91	94	first strand
Strand 2	d	236	239	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	169	177	first strand
Strand 2	d	154	162	anti-parallel
Strand 3	d	129	133	anti-parallel
Strand 4	d	190	193	anti-parallel
Strand 5	d	181	183	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	202	203	first strand
Strand 2	d	434	435	parallel
Strand 3	d	423	424	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	259	261	first strand
Strand 2	d	443	456	anti-parallel
Strand 3	d	284	298	anti-parallel
Strand 4	d	330	333	anti-parallel
Strand 5	d	414	421	anti-parallel
Strand 6	d	382	385	anti-parallel
Strand 7	d	374	377	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	271	273	first strand
Strand 2	d	284	298	anti-parallel
Strand 3	d	443	456	anti-parallel
Strand 4	d	465	470	anti-parallel
Strand 5	d	357	361	parallel
Strand 6	d	393	395	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	302	312	first strand
Strand 2	d	315	323	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	494	499	first strand
Strand 2	f	35	40	anti-parallel
Strand 3	g	603	609	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	45	47	first strand
Strand 2	f	486	491	anti-parallel
Strand 3	f	223	228	anti-parallel
Strand 4	f	242	245	anti-parallel
Strand 5	f	83	85	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	75	76	first strand
Strand 2	f	53	56	parallel
Strand 3	f	216	218	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	91	94	first strand
Strand 2	f	236	239	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	202	203	first strand
Strand 2	f	434	435	parallel
Strand 3	f	423	424	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	259	261	first strand
Strand 2	f	443	456	anti-parallel
Strand 3	f	284	298	anti-parallel
Strand 4	f	329	333	anti-parallel
Strand 5	f	414	421	anti-parallel
Strand 6	f	381	385	anti-parallel
Strand 7	f	374	378	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	271	273	first strand
Strand 2	f	284	298	anti-parallel
Strand 3	f	443	456	anti-parallel
Strand 4	f	465	470	anti-parallel
Strand 5	f	357	361	parallel
Strand 6	f	393	395	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	301	312	first strand
Strand 2	f	315	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVZ