Analysis of interatomic Contacts of Structural Units in PDB entry:
9NWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NWE entry

There are 6 chains in PDB entry 9NWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2993	HIS 4774
B	GLY 2993	HIS 4774
C	LEU 5	ALA 148
D	LEU 5	ALA 148
E	GLN 287	GLU 332
F	GLN 287	GLU 331

There are185 helices in PDB entry 9NWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2996	3008	Right-handed alpha
Helix 2	AA2	A	3014	3033	Right-handed alpha
Helix 3	AA3	A	3039	3044	Right-handed alpha
Helix 4	AA4	A	3046	3064	Right-handed alpha
Helix 5	AA5	A	3073	3092	Right-handed alpha
Helix 6	AA6	A	3093	3115	Right-handed alpha
Helix 7	AA7	A	3156	3178	Right-handed alpha
Helix 8	AA8	A	3187	3199	Right-handed alpha
Helix 9	AA9	A	3205	3219	Right-handed alpha
Helix 10	AB1	A	3220	3248	Right-handed alpha
Helix 11	AB2	A	3265	3286	Right-handed alpha
Helix 12	AB3	A	3286	3297	Right-handed alpha
Helix 13	AB4	A	3297	3310	Right-handed alpha
Helix 14	AB5	A	3315	3329	Right-handed alpha
Helix 15	AB6	A	3330	3337	Right-handed alpha
Helix 16	AB7	A	3386	3403	Right-handed alpha
Helix 17	AB8	A	3404	3417	Right-handed alpha
Helix 18	AB9	A	3421	3439	Right-handed alpha
Helix 19	AC1	A	3440	3455	Right-handed alpha
Helix 20	AC2	A	3456	3464	Right-handed 310
Helix 21	AC3	A	3465	3479	Right-handed alpha
Helix 22	AC4	A	3482	3506	Right-handed alpha
Helix 23	AC5	A	3509	3520	Right-handed alpha
Helix 24	AC6	A	3532	3537	Right-handed alpha
Helix 25	AC7	A	3547	3550	Right-handed alpha
Helix 26	AC8	A	3601	3606	Right-handed 310
Helix 27	AC9	A	3608	3612	Right-handed 310
Helix 28	AD1	A	3727	3769	Right-handed alpha
Helix 29	AD2	A	3786	3791	Right-handed alpha
Helix 30	AD3	A	3793	3805	Right-handed alpha
Helix 31	AD4	A	3805	3840	Right-handed alpha
Helix 32	AD5	A	3850	3856	Right-handed alpha
Helix 33	AD6	A	3872	3891	Right-handed alpha
Helix 34	AD7	A	3893	3904	Right-handed alpha
Helix 35	AD8	A	3904	3912	Right-handed alpha
Helix 36	AD9	A	3918	3934	Right-handed alpha
Helix 37	AE1	A	3936	3958	Right-handed alpha
Helix 38	AE2	A	3963	3981	Right-handed alpha
Helix 39	AE3	A	3985	4002	Right-handed alpha
Helix 40	AE4	A	4005	4025	Right-handed alpha
Helix 41	AE5	A	4031	4035	Right-handed 310
Helix 42	AE6	A	4056	4061	Right-handed alpha
Helix 43	AE7	A	4067	4075	Right-handed alpha
Helix 44	AE8	A	4088	4113	Right-handed alpha
Helix 45	AE9	A	4127	4135	Right-handed alpha
Helix 46	AF1	A	4138	4153	Right-handed alpha
Helix 47	AF2	A	4155	4177	Right-handed alpha
Helix 48	AF3	A	4180	4191	Right-handed alpha
Helix 49	AF4	A	4193	4204	Right-handed alpha
Helix 50	AF5	A	4204	4224	Right-handed alpha
Helix 51	AF6	A	4235	4250	Right-handed alpha
Helix 52	AF7	A	4251	4275	Right-handed alpha
Helix 53	AF8	A	4281	4300	Right-handed alpha
Helix 54	AF9	A	4302	4319	Right-handed alpha
Helix 55	AG1	A	4328	4340	Right-handed alpha
Helix 56	AG2	A	4357	4360	Right-handed 310
Helix 57	AG3	A	4382	4394	Right-handed alpha
Helix 58	AG4	A	4396	4401	Right-handed alpha
Helix 59	AG5	A	4420	4428	Right-handed alpha
Helix 60	AG6	A	4429	4434	Right-handed alpha
Helix 61	AG7	A	4468	4473	Right-handed alpha
Helix 62	AG8	A	4474	4476	Right-handed 310
Helix 63	AG9	A	4477	4482	Right-handed alpha
Helix 64	AH1	A	4483	4495	Right-handed alpha
Helix 65	AH2	A	4497	4516	Right-handed alpha
Helix 66	AH3	A	4518	4526	Right-handed alpha
Helix 67	AH4	A	4527	4530	Right-handed 310
Helix 68	AH5	A	4531	4550	Right-handed alpha
Helix 69	AH6	A	4554	4575	Right-handed alpha
Helix 70	AH7	A	4591	4603	Right-handed alpha
Helix 71	AH8	A	4603	4609	Right-handed alpha
Helix 72	AH9	A	4609	4624	Right-handed alpha
Helix 73	AI1	A	4631	4639	Right-handed alpha
Helix 74	AI2	A	4640	4642	Right-handed 310
Helix 75	AI3	A	4643	4650	Right-handed alpha
Helix 76	AI4	A	4652	4669	Right-handed alpha
Helix 77	AI5	A	4672	4685	Right-handed alpha
Helix 78	AI6	A	4686	4699	Right-handed alpha
Helix 79	AI7	A	4707	4715	Right-handed alpha
Helix 80	AI8	A	4717	4731	Right-handed alpha
Helix 81	AI9	A	4733	4742	Right-handed alpha
Helix 82	AJ1	A	4744	4753	Right-handed alpha
Helix 83	AJ2	A	4759	4772	Right-handed alpha
Helix 84	AJ3	B	2996	3008	Right-handed alpha
Helix 85	AJ4	B	3014	3033	Right-handed alpha
Helix 86	AJ5	B	3039	3044	Right-handed alpha
Helix 87	AJ6	B	3046	3064	Right-handed alpha
Helix 88	AJ7	B	3073	3092	Right-handed alpha
Helix 89	AJ8	B	3093	3115	Right-handed alpha
Helix 90	AJ9	B	3156	3178	Right-handed alpha
Helix 91	AK1	B	3187	3200	Right-handed alpha
Helix 92	AK2	B	3205	3219	Right-handed alpha
Helix 93	AK3	B	3220	3248	Right-handed alpha
Helix 94	AK4	B	3265	3286	Right-handed alpha
Helix 95	AK5	B	3286	3297	Right-handed alpha
Helix 96	AK6	B	3297	3310	Right-handed alpha
Helix 97	AK7	B	3315	3329	Right-handed alpha
Helix 98	AK8	B	3330	3337	Right-handed alpha
Helix 99	AK9	B	3386	3403	Right-handed alpha
Helix 100	AL1	B	3404	3417	Right-handed alpha
Helix 101	AL2	B	3421	3439	Right-handed alpha
Helix 102	AL3	B	3440	3455	Right-handed alpha
Helix 103	AL4	B	3456	3464	Right-handed 310
Helix 104	AL5	B	3465	3479	Right-handed alpha
Helix 105	AL6	B	3482	3506	Right-handed alpha
Helix 106	AL7	B	3509	3520	Right-handed alpha
Helix 107	AL8	B	3547	3550	Right-handed alpha
Helix 108	AL9	B	3601	3606	Right-handed 310
Helix 109	AM1	B	3608	3612	Right-handed 310
Helix 110	AM2	B	3727	3770	Right-handed alpha
Helix 111	AM3	B	3786	3792	Right-handed alpha
Helix 112	AM4	B	3793	3805	Right-handed alpha
Helix 113	AM5	B	3805	3840	Right-handed alpha
Helix 114	AM6	B	3850	3856	Right-handed alpha
Helix 115	AM7	B	3872	3891	Right-handed alpha
Helix 116	AM8	B	3893	3904	Right-handed alpha
Helix 117	AM9	B	3904	3912	Right-handed alpha
Helix 118	AN1	B	3918	3933	Right-handed alpha
Helix 119	AN2	B	3936	3955	Right-handed alpha
Helix 120	AN3	B	3963	3981	Right-handed alpha
Helix 121	AN4	B	3985	4003	Right-handed alpha
Helix 122	AN5	B	4005	4025	Right-handed alpha
Helix 123	AN6	B	4056	4061	Right-handed alpha
Helix 124	AN7	B	4067	4075	Right-handed alpha
Helix 125	AN8	B	4088	4112	Right-handed alpha
Helix 126	AN9	B	4128	4134	Right-handed alpha
Helix 127	AO1	B	4138	4153	Right-handed alpha
Helix 128	AO2	B	4155	4177	Right-handed alpha
Helix 129	AO3	B	4180	4191	Right-handed alpha
Helix 130	AO4	B	4193	4204	Right-handed alpha
Helix 131	AO5	B	4204	4224	Right-handed alpha
Helix 132	AO6	B	4235	4250	Right-handed alpha
Helix 133	AO7	B	4251	4275	Right-handed alpha
Helix 134	AO8	B	4281	4300	Right-handed alpha
Helix 135	AO9	B	4302	4319	Right-handed alpha
Helix 136	AP1	B	4328	4340	Right-handed alpha
Helix 137	AP2	B	4357	4360	Right-handed 310
Helix 138	AP3	B	4382	4394	Right-handed alpha
Helix 139	AP4	B	4396	4401	Right-handed alpha
Helix 140	AP5	B	4420	4428	Right-handed alpha
Helix 141	AP6	B	4429	4434	Right-handed alpha
Helix 142	AP7	B	4468	4473	Right-handed alpha
Helix 143	AP8	B	4474	4476	Right-handed 310
Helix 144	AP9	B	4477	4482	Right-handed alpha
Helix 145	AQ1	B	4483	4495	Right-handed alpha
Helix 146	AQ2	B	4497	4516	Right-handed alpha
Helix 147	AQ3	B	4518	4526	Right-handed alpha
Helix 148	AQ4	B	4527	4530	Right-handed 310
Helix 149	AQ5	B	4531	4550	Right-handed alpha
Helix 150	AQ6	B	4554	4576	Right-handed alpha
Helix 151	AQ7	B	4591	4603	Right-handed alpha
Helix 152	AQ8	B	4603	4609	Right-handed alpha
Helix 153	AQ9	B	4609	4624	Right-handed alpha
Helix 154	AR1	B	4631	4637	Right-handed alpha
Helix 155	AR2	B	4637	4643	Right-handed alpha
Helix 156	AR3	B	4643	4650	Right-handed alpha
Helix 157	AR4	B	4652	4669	Right-handed alpha
Helix 158	AR5	B	4672	4685	Right-handed alpha
Helix 159	AR6	B	4686	4699	Right-handed alpha
Helix 160	AR7	B	4707	4715	Right-handed alpha
Helix 161	AR8	B	4717	4731	Right-handed alpha
Helix 162	AR9	B	4733	4742	Right-handed alpha
Helix 163	AS1	B	4744	4753	Right-handed alpha
Helix 164	AS2	B	4759	4772	Right-handed alpha
Helix 165	AS3	C	6	21	Right-handed alpha
Helix 166	AS4	C	27	41	Right-handed alpha
Helix 167	AS5	C	45	56	Right-handed alpha
Helix 168	AS6	C	59	63	Right-handed 310
Helix 169	AS7	C	65	77	Right-handed alpha
Helix 170	AS8	C	82	94	Right-handed alpha
Helix 171	AS9	C	102	114	Right-handed alpha
Helix 172	AT1	C	118	130	Right-handed alpha
Helix 173	AT2	C	138	148	Right-handed alpha
Helix 174	AT3	D	6	21	Right-handed alpha
Helix 175	AT4	D	32	40	Right-handed alpha
Helix 176	AT5	D	45	56	Right-handed alpha
Helix 177	AT6	D	65	79	Right-handed alpha
Helix 178	AT7	D	79	95	Right-handed alpha
Helix 179	AT8	D	102	113	Right-handed alpha
Helix 180	AT9	D	118	130	Right-handed alpha
Helix 181	AU1	D	138	148	Right-handed alpha
Helix 182	AU2	E	291	296	Right-handed alpha
Helix 183	AU3	E	302	329	Right-handed alpha
Helix 184	AU4	F	291	296	Right-handed alpha
Helix 185	AU5	F	302	329	Right-handed alpha

There are 12 sheets in PDB entry 9NWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3249	3252	first strand
Strand 2	A	3255	3258	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3545	3546	first strand
Strand 2	A	3710	3718	anti-parallel
Strand 3	A	3560	3579	anti-parallel
Strand 4	A	3551	3556	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3545	3546	first strand
Strand 2	A	3710	3718	anti-parallel
Strand 3	A	3560	3579	anti-parallel
Strand 4	A	3626	3649	anti-parallel
Strand 5	A	3585	3595	anti-parallel
Strand 6	A	3613	3619	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3658	3659	first strand
Strand 2	A	3666	3667	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4051	4052	first strand
Strand 2	A	4119	4120	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4372	4373	first strand
Strand 2	A	4350	4355	anti-parallel
Strand 3	A	4438	4444	parallel
Strand 4	A	4406	4410	anti-parallel
Strand 5	A	4413	4415	anti-parallel
Strand 6	A	4455	4456	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3249	3252	first strand
Strand 2	B	3255	3258	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3543	3546	first strand
Strand 2	B	3710	3719	anti-parallel
Strand 3	B	3560	3579	anti-parallel
Strand 4	B	3551	3556	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3543	3546	first strand
Strand 2	B	3710	3719	anti-parallel
Strand 3	B	3560	3579	anti-parallel
Strand 4	B	3626	3647	anti-parallel
Strand 5	B	3587	3595	anti-parallel
Strand 6	B	3613	3619	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3658	3659	first strand
Strand 2	B	3666	3667	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4051	4052	first strand
Strand 2	B	4119	4120	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4372	4373	first strand
Strand 2	B	4350	4355	anti-parallel
Strand 3	B	4438	4444	parallel
Strand 4	B	4406	4410	anti-parallel
Strand 5	B	4413	4415	anti-parallel
Strand 6	B	4455	4456	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NWE