Analysis of interatomic Contacts of Structural Units in PDB entry:
9NWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NWF entry

There are 4 chains in PDB entry 9NWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 21TYR 405
B
 GLU 19TYR 405
C
 GLN 21TYR 405
D
 GLN 21TYR 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 9NWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 48Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
66 69Right-handed 310
Helix 4
AA4
A
70 88Right-handed alpha
Helix 5
AA5
A
94 116Right-handed alpha
Helix 6
AA6
A
130 145Right-handed alpha
Helix 7
AA7
A
145 150Right-handed alpha
Helix 8
AA8
A
154 168Right-handed alpha
Helix 9
AA9
A
169 171Right-handed 310
Helix 10
AB1
A
178 192Right-handed alpha
Helix 11
AB2
A
197 211Right-handed alpha
Helix 12
AB3
A
228 233Right-handed alpha
Helix 13
AB4
A
233 246Right-handed alpha
Helix 14
AB5
A
252 273Right-handed alpha
Helix 15
AB6
A
286 293Right-handed 310
Helix 16
AB7
A
294 303Right-handed alpha
Helix 17
AB8
A
311 328Right-handed alpha
Helix 18
AB9
A
347 351Right-handed 310
Helix 19
AC1
A
356 372Right-handed 310
Helix 20
AC2
A
376 381Right-handed alpha
Helix 21
AC3
A
386 393Right-handed alpha
Helix 22
AC4
B
23 49Right-handed alpha
Helix 23
AC5
B
50 55Right-handed alpha
Helix 24
AC6
B
66 69Right-handed 310
Helix 25
AC7
B
70 89Right-handed alpha
Helix 26
AC8
B
94 115Right-handed alpha
Helix 27
AC9
B
130 145Right-handed alpha
Helix 28
AD1
B
145 150Right-handed alpha
Helix 29
AD2
B
154 167Right-handed alpha
Helix 30
AD3
B
168 170Right-handed 310
Helix 31
AD4
B
178 192Right-handed alpha
Helix 32
AD5
B
197 211Right-handed alpha
Helix 33
AD6
B
228 233Right-handed alpha
Helix 34
AD7
B
233 246Right-handed alpha
Helix 35
AD8
B
252 273Right-handed alpha
Helix 36
AD9
B
286 293Right-handed 310
Helix 37
AE1
B
294 303Right-handed alpha
Helix 38
AE2
B
311 327Right-handed alpha
Helix 39
AE3
B
347 351Right-handed 310
Helix 40
AE4
B
357 372Right-handed 310
Helix 41
AE5
B
376 381Right-handed alpha
Helix 42
AE6
B
386 393Right-handed alpha
Helix 43
AE7
C
23 48Right-handed alpha
Helix 44
AE8
C
50 55Right-handed alpha
Helix 45
AE9
C
66 69Right-handed 310
Helix 46
AF1
C
70 89Right-handed alpha
Helix 47
AF2
C
94 115Right-handed alpha
Helix 48
AF3
C
130 145Right-handed alpha
Helix 49
AF4
C
145 150Right-handed alpha
Helix 50
AF5
C
154 167Right-handed alpha
Helix 51
AF6
C
178 192Right-handed alpha
Helix 52
AF7
C
197 211Right-handed alpha
Helix 53
AF8
C
228 233Right-handed alpha
Helix 54
AF9
C
233 246Right-handed alpha
Helix 55
AG1
C
252 273Right-handed alpha
Helix 56
AG2
C
286 293Right-handed 310
Helix 57
AG3
C
294 303Right-handed alpha
Helix 58
AG4
C
311 328Right-handed alpha
Helix 59
AG5
C
347 351Right-handed 310
Helix 60
AG6
C
357 372Right-handed 310
Helix 61
AG7
C
376 381Right-handed alpha
Helix 62
AG8
C
386 394Right-handed alpha
Helix 63
AG9
D
23 48Right-handed alpha
Helix 64
AH1
D
50 55Right-handed alpha
Helix 65
AH2
D
66 88Right-handed alpha
Helix 66
AH3
D
94 115Right-handed alpha
Helix 67
AH4
D
130 145Right-handed alpha
Helix 68
AH5
D
145 150Right-handed alpha
Helix 69
AH6
D
154 167Right-handed alpha
Helix 70
AH7
D
168 171Right-handed 310
Helix 71
AH8
D
178 192Right-handed alpha
Helix 72
AH9
D
197 211Right-handed alpha
Helix 73
AI1
D
228 233Right-handed alpha
Helix 74
AI2
D
233 246Right-handed alpha
Helix 75
AI3
D
252 273Right-handed alpha
Helix 76
AI4
D
286 293Right-handed 310
Helix 77
AI5
D
294 303Right-handed alpha
Helix 78
AI6
D
311 328Right-handed alpha
Helix 79
AI7
D
347 351Right-handed 310
Helix 80
AI8
D
356 372Right-handed 310
Helix 81
AI9
D
376 381Right-handed alpha
Helix 82
AJ1
D
386 394Right-handed alpha
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There are 4 sheets in PDB entry 9NWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
217 218anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 214first strand
Strand 2
C
217 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 214first strand
Strand 2
D
217 218anti-parallel
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