Analysis of interatomic Contacts of Structural Units in PDB entry:
9NWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NWP entry

There are 4 chains in PDB entry 9NWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	ARG 862
B	ILE 27	ARG 862
C	ILE 27	ARG 862
D	ILE 27	ARG 862

There are129 helices in PDB entry 9NWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	53	Right-handed alpha
Helix 2	AA2	A	74	89	Right-handed alpha
Helix 3	AA3	A	98	113	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	151	164	Right-handed alpha
Helix 6	AA6	A	177	182	Right-handed 310
Helix 7	AA7	A	184	189	Right-handed alpha
Helix 8	AA8	A	203	215	Right-handed alpha
Helix 9	AA9	A	216	222	Right-handed alpha
Helix 10	AB1	A	235	249	Right-handed alpha
Helix 11	AB2	A	266	277	Right-handed alpha
Helix 12	AB3	A	293	297	Right-handed 310
Helix 13	AB4	A	306	310	Right-handed 310
Helix 14	AB5	A	316	320	Right-handed 310
Helix 15	AB6	A	321	345	Right-handed alpha
Helix 16	AB7	A	364	376	Right-handed alpha
Helix 17	AB8	A	469	483	Right-handed alpha
Helix 18	AB9	A	506	514	Right-handed alpha
Helix 19	AC1	A	527	532	Right-handed alpha
Helix 20	AC2	A	559	563	Right-handed 310
Helix 21	AC3	A	566	591	Right-handed alpha
Helix 22	AC4	A	604	617	Right-handed alpha
Helix 23	AC5	A	627	661	Right-handed alpha
Helix 24	AC6	A	667	674	Right-handed alpha
Helix 25	AC7	A	685	697	Right-handed alpha
Helix 26	AC8	A	706	713	Right-handed alpha
Helix 27	AC9	A	714	718	Right-handed 310
Helix 28	AD1	A	724	734	Right-handed alpha
Helix 29	AD2	A	743	753	Right-handed alpha
Helix 30	AD3	A	779	795	Right-handed alpha
Helix 31	AD4	A	795	805	Right-handed alpha
Helix 32	AD5	A	831	833	Right-handed 310
Helix 33	AD6	A	834	850	Right-handed alpha
Helix 34	AD7	A	850	856	Right-handed alpha
Helix 35	AD8	B	37	54	Right-handed alpha
Helix 36	AD9	B	76	89	Right-handed alpha
Helix 37	AE1	B	98	113	Right-handed alpha
Helix 38	AE2	B	122	126	Right-handed 310
Helix 39	AE3	B	151	163	Right-handed alpha
Helix 40	AE4	B	177	180	Right-handed 310
Helix 41	AE5	B	181	191	Right-handed alpha
Helix 42	AE6	B	203	213	Right-handed alpha
Helix 43	AE7	B	216	227	Right-handed alpha
Helix 44	AE8	B	235	249	Right-handed alpha
Helix 45	AE9	B	266	277	Right-handed alpha
Helix 46	AF1	B	293	297	Right-handed 310
Helix 47	AF2	B	306	311	Right-handed alpha
Helix 48	AF3	B	314	319	Right-handed alpha
Helix 49	AF4	B	321	344	Right-handed alpha
Helix 50	AF5	B	365	375	Right-handed alpha
Helix 51	AF6	B	469	483	Right-handed alpha
Helix 52	AF7	B	506	514	Right-handed alpha
Helix 53	AF8	B	527	532	Right-handed 310
Helix 54	AF9	B	566	591	Right-handed alpha
Helix 55	AG1	B	604	615	Right-handed alpha
Helix 56	AG2	B	627	659	Right-handed alpha
Helix 57	AG3	B	667	674	Right-handed alpha
Helix 58	AG4	B	685	697	Right-handed alpha
Helix 59	AG5	B	702	713	Right-handed alpha
Helix 60	AG6	B	714	718	Right-handed 310
Helix 61	AG7	B	724	735	Right-handed alpha
Helix 62	AG8	B	743	753	Right-handed alpha
Helix 63	AG9	B	778	782	Right-handed 310
Helix 64	AH1	B	783	794	Right-handed alpha
Helix 65	AH2	B	795	805	Right-handed alpha
Helix 66	AH3	B	827	832	Right-handed alpha
Helix 67	AH4	B	834	860	Right-handed alpha
Helix 68	AH5	C	38	52	Right-handed alpha
Helix 69	AH6	C	74	89	Right-handed alpha
Helix 70	AH7	C	98	113	Right-handed alpha
Helix 71	AH8	C	151	164	Right-handed alpha
Helix 72	AH9	C	177	180	Right-handed 310
Helix 73	AI1	C	181	190	Right-handed alpha
Helix 74	AI2	C	203	215	Right-handed alpha
Helix 75	AI3	C	216	227	Right-handed alpha
Helix 76	AI4	C	235	249	Right-handed alpha
Helix 77	AI5	C	266	277	Right-handed alpha
Helix 78	AI6	C	293	298	Right-handed alpha
Helix 79	AI7	C	306	311	Right-handed alpha
Helix 80	AI8	C	316	320	Right-handed 310
Helix 81	AI9	C	321	344	Right-handed alpha
Helix 82	AJ1	C	363	374	Right-handed alpha
Helix 83	AJ2	C	469	483	Right-handed alpha
Helix 84	AJ3	C	506	514	Right-handed alpha
Helix 85	AJ4	C	527	532	Right-handed alpha
Helix 86	AJ5	C	557	562	Right-handed 310
Helix 87	AJ6	C	568	591	Right-handed alpha
Helix 88	AJ7	C	604	617	Right-handed alpha
Helix 89	AJ8	C	627	656	Right-handed alpha
Helix 90	AJ9	C	685	697	Right-handed alpha
Helix 91	AK1	C	704	713	Right-handed alpha
Helix 92	AK2	C	724	735	Right-handed alpha
Helix 93	AK3	C	743	753	Right-handed alpha
Helix 94	AK4	C	780	795	Right-handed alpha
Helix 95	AK5	C	795	805	Right-handed alpha
Helix 96	AK6	C	812	817	Right-handed 310
Helix 97	AK7	C	827	830	Right-handed 310
Helix 98	AK8	C	831	860	Right-handed alpha
Helix 99	AK9	D	37	54	Right-handed alpha
Helix 100	AL1	D	74	89	Right-handed alpha
Helix 101	AL2	D	98	113	Right-handed alpha
Helix 102	AL3	D	122	126	Right-handed 310
Helix 103	AL4	D	151	164	Right-handed alpha
Helix 104	AL5	D	178	189	Right-handed alpha
Helix 105	AL6	D	203	208	Right-handed alpha
Helix 106	AL7	D	210	215	Right-handed alpha
Helix 107	AL8	D	216	227	Right-handed alpha
Helix 108	AL9	D	235	249	Right-handed alpha
Helix 109	AM1	D	268	277	Right-handed alpha
Helix 110	AM2	D	306	311	Right-handed alpha
Helix 111	AM3	D	316	320	Right-handed 310
Helix 112	AM4	D	321	344	Right-handed alpha
Helix 113	AM5	D	363	375	Right-handed alpha
Helix 114	AM6	D	469	483	Right-handed alpha
Helix 115	AM7	D	506	514	Right-handed alpha
Helix 116	AM8	D	529	533	Right-handed 310
Helix 117	AM9	D	558	562	Right-handed 310
Helix 118	AN1	D	566	591	Right-handed alpha
Helix 119	AN2	D	604	617	Right-handed alpha
Helix 120	AN3	D	627	655	Right-handed alpha
Helix 121	AN4	D	667	674	Right-handed alpha
Helix 122	AN5	D	685	696	Right-handed alpha
Helix 123	AN6	D	702	714	Right-handed alpha
Helix 124	AN7	D	724	735	Right-handed alpha
Helix 125	AN8	D	743	752	Right-handed alpha
Helix 126	AN9	D	780	794	Right-handed alpha
Helix 127	AO1	D	798	805	Right-handed alpha
Helix 128	AO2	D	827	832	Right-handed alpha
Helix 129	AO3	D	833	858	Right-handed alpha

There are 31 sheets in PDB entry 9NWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	70	first strand
Strand 2	A	28	34	parallel
Strand 3	A	93	96	parallel
Strand 4	A	116	118	parallel
Strand 5	A	143	145	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	169	173	parallel
Strand 3	A	230	233	parallel
Strand 4	A	257	261	parallel
Strand 5	A	280	286	parallel
Strand 6	A	398	403	anti-parallel
Strand 7	A	413	420	anti-parallel
Strand 8	A	424	427	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	303	304	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	380	first strand
Strand 2	A	383	386	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	490	first strand
Strand 2	A	442	447	parallel
Strand 3	A	519	521	parallel
Strand 4	A	773	774	anti-parallel
Strand 5	A	535	536	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	463	468	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	769	770	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	680	first strand
Strand 2	A	738	742	parallel
Strand 3	A	545	550	anti-parallel
Strand 4	A	758	760	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	70	first strand
Strand 2	B	28	34	parallel
Strand 3	B	93	97	parallel
Strand 4	B	116	120	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	167	173	parallel
Strand 3	B	230	233	parallel
Strand 4	B	257	261	parallel
Strand 5	B	280	286	parallel
Strand 6	B	398	401	anti-parallel
Strand 7	B	415	420	anti-parallel
Strand 8	B	424	426	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	303	304	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	410	412	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	490	first strand
Strand 2	B	442	447	parallel
Strand 3	B	519	521	parallel
Strand 4	B	773	775	anti-parallel
Strand 5	B	534	536	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	463	468	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	738	742	parallel
Strand 3	B	541	550	anti-parallel
Strand 4	B	758	770	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	28	34	parallel
Strand 3	C	68	70	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	28	34	parallel
Strand 3	C	93	96	parallel
Strand 4	C	116	119	parallel
Strand 5	C	143	145	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	169	172	parallel
Strand 3	C	229	233	parallel
Strand 4	C	257	261	parallel
Strand 5	C	280	287	parallel
Strand 6	C	397	402	anti-parallel
Strand 7	C	414	420	anti-parallel
Strand 8	C	424	427	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	300	first strand
Strand 2	C	303	304	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	380	first strand
Strand 2	C	383	386	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	490	first strand
Strand 2	C	442	447	parallel
Strand 3	C	519	525	parallel
Strand 4	C	769	774	anti-parallel
Strand 5	C	535	536	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	490	first strand
Strand 2	C	442	447	parallel
Strand 3	C	519	525	parallel
Strand 4	C	769	774	anti-parallel
Strand 5	C	541	542	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	467	468	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	679	680	first strand
Strand 2	C	738	742	parallel
Strand 3	C	545	550	anti-parallel
Strand 4	C	758	761	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	70	first strand
Strand 2	D	28	34	parallel
Strand 3	D	93	96	parallel
Strand 4	D	116	119	parallel
Strand 5	D	143	145	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	199	first strand
Strand 2	D	167	172	parallel
Strand 3	D	229	233	parallel
Strand 4	D	257	261	parallel
Strand 5	D	280	286	parallel
Strand 6	D	398	403	anti-parallel
Strand 7	D	413	418	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	300	first strand
Strand 2	D	303	304	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	380	first strand
Strand 2	D	383	385	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	490	first strand
Strand 2	D	442	447	parallel
Strand 3	D	519	520	parallel
Strand 4	D	773	774	anti-parallel
Strand 5	D	535	536	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	460	first strand
Strand 2	D	463	468	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	680	first strand
Strand 2	D	738	742	parallel
Strand 3	D	545	550	anti-parallel
Strand 4	D	758	763	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NWP