Analysis of interatomic Contacts of Structural Units in PDB entry:
9NWQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NWQ entry

There are 4 chains in PDB entry 9NWQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 441	ARG 862
B	VAL 441	ARG 862
C	VAL 441	ARG 862
D	VAL 441	ARG 862

There are 64 helices in PDB entry 9NWQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	469	483	Right-handed alpha
Helix 2	AA2	A	506	514	Right-handed alpha
Helix 3	AA3	A	527	532	Right-handed alpha
Helix 4	AA4	A	559	563	Right-handed 310
Helix 5	AA5	A	566	591	Right-handed alpha
Helix 6	AA6	A	606	617	Right-handed alpha
Helix 7	AA7	A	627	658	Right-handed alpha
Helix 8	AA8	A	660	664	Right-handed 310
Helix 9	AA9	A	667	672	Right-handed alpha
Helix 10	AB1	A	685	696	Right-handed alpha
Helix 11	AB2	A	703	713	Right-handed alpha
Helix 12	AB3	A	724	735	Right-handed alpha
Helix 13	AB4	A	743	753	Right-handed alpha
Helix 14	AB5	A	779	794	Right-handed alpha
Helix 15	AB6	A	795	805	Right-handed alpha
Helix 16	AB7	A	818	824	Right-handed 310
Helix 17	AB8	A	827	856	Right-handed alpha
Helix 18	AB9	B	469	483	Right-handed alpha
Helix 19	AC1	B	506	514	Right-handed alpha
Helix 20	AC2	B	527	532	Right-handed alpha
Helix 21	AC3	B	568	591	Right-handed alpha
Helix 22	AC4	B	604	617	Right-handed alpha
Helix 23	AC5	B	627	659	Right-handed alpha
Helix 24	AC6	B	667	674	Right-handed alpha
Helix 25	AC7	B	685	696	Right-handed alpha
Helix 26	AC8	B	702	713	Right-handed alpha
Helix 27	AC9	B	724	734	Right-handed alpha
Helix 28	AD1	B	743	753	Right-handed alpha
Helix 29	AD2	B	780	795	Right-handed alpha
Helix 30	AD3	B	795	803	Right-handed alpha
Helix 31	AD4	B	827	857	Right-handed alpha
Helix 32	AD5	C	469	483	Right-handed alpha
Helix 33	AD6	C	506	514	Right-handed alpha
Helix 34	AD7	C	527	532	Right-handed alpha
Helix 35	AD8	C	559	563	Right-handed 310
Helix 36	AD9	C	566	591	Right-handed alpha
Helix 37	AE1	C	604	617	Right-handed alpha
Helix 38	AE2	C	627	659	Right-handed alpha
Helix 39	AE3	C	667	674	Right-handed alpha
Helix 40	AE4	C	685	696	Right-handed alpha
Helix 41	AE5	C	703	713	Right-handed alpha
Helix 42	AE6	C	714	718	Right-handed 310
Helix 43	AE7	C	724	734	Right-handed alpha
Helix 44	AE8	C	743	753	Right-handed alpha
Helix 45	AE9	C	779	795	Right-handed alpha
Helix 46	AF1	C	795	805	Right-handed alpha
Helix 47	AF2	C	827	852	Right-handed alpha
Helix 48	AF3	C	853	858	Right-handed 310
Helix 49	AF4	D	469	483	Right-handed alpha
Helix 50	AF5	D	506	514	Right-handed alpha
Helix 51	AF6	D	527	532	Right-handed alpha
Helix 52	AF7	D	558	562	Right-handed 310
Helix 53	AF8	D	566	591	Right-handed alpha
Helix 54	AF9	D	606	617	Right-handed alpha
Helix 55	AG1	D	627	659	Right-handed alpha
Helix 56	AG2	D	667	674	Right-handed alpha
Helix 57	AG3	D	685	697	Right-handed alpha
Helix 58	AG4	D	702	713	Right-handed alpha
Helix 59	AG5	D	714	718	Right-handed 310
Helix 60	AG6	D	724	735	Right-handed alpha
Helix 61	AG7	D	743	753	Right-handed alpha
Helix 62	AG8	D	779	795	Right-handed alpha
Helix 63	AG9	D	795	803	Right-handed alpha
Helix 64	AH1	D	827	860	Right-handed alpha

There are 16 sheets in PDB entry 9NWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	490	first strand
Strand 2	A	442	447	parallel
Strand 3	A	519	520	parallel
Strand 4	A	773	774	anti-parallel
Strand 5	A	535	536	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	463	468	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	769	770	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	680	first strand
Strand 2	A	738	742	parallel
Strand 3	A	545	550	anti-parallel
Strand 4	A	758	762	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	490	first strand
Strand 2	B	442	447	parallel
Strand 3	B	519	521	parallel
Strand 4	B	772	774	anti-parallel
Strand 5	B	535	536	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	463	468	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	769	770	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	738	742	parallel
Strand 3	B	545	550	anti-parallel
Strand 4	B	758	761	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	490	first strand
Strand 2	C	442	447	parallel
Strand 3	C	519	525	parallel
Strand 4	C	769	774	anti-parallel
Strand 5	C	535	536	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	490	first strand
Strand 2	C	442	447	parallel
Strand 3	C	519	525	parallel
Strand 4	C	769	774	anti-parallel
Strand 5	C	541	542	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	460	first strand
Strand 2	C	463	468	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	679	680	first strand
Strand 2	C	738	742	parallel
Strand 3	C	545	550	anti-parallel
Strand 4	C	758	760	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	490	first strand
Strand 2	D	442	447	parallel
Strand 3	D	519	525	parallel
Strand 4	D	769	774	anti-parallel
Strand 5	D	535	536	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	490	first strand
Strand 2	D	442	447	parallel
Strand 3	D	519	525	parallel
Strand 4	D	769	774	anti-parallel
Strand 5	D	541	542	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	460	first strand
Strand 2	D	463	468	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	681	first strand
Strand 2	D	738	742	parallel
Strand 3	D	545	550	anti-parallel
Strand 4	D	758	762	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NWQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NWQ