Analysis of interatomic Contacts of Structural Units in PDB entry:
9NXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NXX entry

There are 4 chains in PDB entry 9NXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10LEU 383
B
 THR 6GLY 384
C
 SER 10LEU 383
D
 ALA 8GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 9NXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
70 87Right-handed alpha
Helix 3
AA3
A
90 92Right-handed 310
Helix 4
AA4
A
106 115Right-handed alpha
Helix 5
AA5
A
117 132Right-handed alpha
Helix 6
AA6
A
136 147Right-handed alpha
Helix 7
AA7
A
150 159Right-handed alpha
Helix 8
AA8
A
168 181Right-handed alpha
Helix 9
AA9
A
191 210Right-handed alpha
Helix 10
AB1
A
218 234Right-handed alpha
Helix 11
AB2
A
248 258Right-handed alpha
Helix 12
AB3
A
259 266Right-handed alpha
Helix 13
AB4
A
271 295Right-handed alpha
Helix 14
AB5
A
301 325Right-handed alpha
Helix 15
AB6
A
329 345Right-handed alpha
Helix 16
AB7
A
346 348Right-handed 310
Helix 17
AB8
A
356 370Right-handed alpha
Helix 18
AB9
A
378 383Right-handed alpha
Helix 19
AC1
B
7 28Right-handed alpha
Helix 20
AC2
B
70 87Right-handed alpha
Helix 21
AC3
B
90 92Right-handed 310
Helix 22
AC4
B
106 114Right-handed alpha
Helix 23
AC5
B
117 123Right-handed alpha
Helix 24
AC6
B
140 147Right-handed alpha
Helix 25
AC7
B
149 159Right-handed alpha
Helix 26
AC8
B
168 181Right-handed alpha
Helix 27
AC9
B
188 210Right-handed alpha
Helix 28
AD1
B
218 233Right-handed alpha
Helix 29
AD2
B
248 258Right-handed alpha
Helix 30
AD3
B
259 268Right-handed alpha
Helix 31
AD4
B
271 295Right-handed alpha
Helix 32
AD5
B
302 325Right-handed alpha
Helix 33
AD6
B
329 345Right-handed alpha
Helix 34
AD7
B
356 370Right-handed alpha
Helix 35
AD8
C
16 18Right-handed 310
Helix 36
AD9
C
19 28Right-handed alpha
Helix 37
AE1
C
70 87Right-handed alpha
Helix 38
AE2
C
90 92Right-handed 310
Helix 39
AE3
C
106 115Right-handed alpha
Helix 40
AE4
C
117 132Right-handed alpha
Helix 41
AE5
C
136 147Right-handed alpha
Helix 42
AE6
C
150 159Right-handed alpha
Helix 43
AE7
C
168 181Right-handed alpha
Helix 44
AE8
C
191 210Right-handed alpha
Helix 45
AE9
C
218 234Right-handed alpha
Helix 46
AF1
C
248 258Right-handed alpha
Helix 47
AF2
C
259 266Right-handed alpha
Helix 48
AF3
C
271 295Right-handed alpha
Helix 49
AF4
C
301 325Right-handed alpha
Helix 50
AF5
C
329 345Right-handed alpha
Helix 51
AF6
C
356 370Right-handed alpha
Helix 52
AF7
D
9 28Right-handed alpha
Helix 53
AF8
D
70 87Right-handed alpha
Helix 54
AF9
D
90 92Right-handed 310
Helix 55
AG1
D
106 114Right-handed alpha
Helix 56
AG2
D
117 127Right-handed alpha
Helix 57
AG3
D
140 147Right-handed alpha
Helix 58
AG4
D
149 159Right-handed alpha
Helix 59
AG5
D
168 181Right-handed alpha
Helix 60
AG6
D
188 210Right-handed alpha
Helix 61
AG7
D
218 233Right-handed alpha
Helix 62
AG8
D
248 258Right-handed alpha
Helix 63
AG9
D
261 268Right-handed alpha
Helix 64
AH1
D
271 295Right-handed alpha
Helix 65
AH2
D
299 301Right-handed 310
Helix 66
AH3
D
302 325Right-handed alpha
Helix 67
AH4
D
329 345Right-handed alpha
Helix 68
AH5
D
346 348Right-handed 310
Helix 69
AH6
D
356 370Right-handed alpha
Helix 70
AH7
D
378 383Right-handed alpha
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There are 6 sheets in PDB entry 9NXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
94 100parallel
Strand 3
A
160 164parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
94 100parallel
Strand 3
A
34 36parallel
Strand 4
A
215 217anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
94 100parallel
Strand 3
B
51 57parallel
Strand 4
B
43 46anti-parallel
Strand 5
B
34 37anti-parallel
Strand 6
B
215 217anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 164first strand
Strand 2
C
94 100parallel
Strand 3
C
34 36parallel
Strand 4
C
216 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
349 350first strand
Strand 2
C
353 354anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 164first strand
Strand 2
D
94 100parallel
Strand 3
D
51 57parallel
Strand 4
D
43 46anti-parallel
Strand 5
D
34 37anti-parallel
Strand 6
D
215 217anti-parallel
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