Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NY1 entry

There are 4 chains in PDB entry 9NY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13LEU 383
B
 TRP 12LEU 383
C
 VAL 9LEU 383
D
 VAL 9GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9NY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 28Right-handed alpha
Helix 2
AA2
A
70 86Right-handed alpha
Helix 3
AA3
A
106 115Right-handed alpha
Helix 4
AA4
A
140 149Right-handed alpha
Helix 5
AA5
A
155 160Right-handed alpha
Helix 6
AA6
A
168 181Right-handed alpha
Helix 7
AA7
A
188 210Right-handed alpha
Helix 8
AA8
A
217 233Right-handed alpha
Helix 9
AA9
A
248 258Right-handed alpha
Helix 10
AB1
A
261 266Right-handed alpha
Helix 11
AB2
A
273 295Right-handed alpha
Helix 12
AB3
A
299 325Right-handed alpha
Helix 13
AB4
A
329 343Right-handed alpha
Helix 14
AB5
A
344 347Right-handed 310
Helix 15
AB6
A
356 370Right-handed alpha
Helix 16
AB7
A
378 383Right-handed alpha
Helix 17
AB8
B
19 28Right-handed alpha
Helix 18
AB9
B
82 87Right-handed alpha
Helix 19
AC1
B
107 113Right-handed alpha
Helix 20
AC2
B
117 123Right-handed alpha
Helix 21
AC3
B
123 129Right-handed alpha
Helix 22
AC4
B
144 150Right-handed alpha
Helix 23
AC5
B
168 181Right-handed alpha
Helix 24
AC6
B
193 206Right-handed alpha
Helix 25
AC7
B
218 234Right-handed alpha
Helix 26
AC8
B
251 257Right-handed alpha
Helix 27
AC9
B
259 268Right-handed alpha
Helix 28
AD1
B
273 295Right-handed alpha
Helix 29
AD2
B
303 308Right-handed alpha
Helix 30
AD3
B
309 325Right-handed alpha
Helix 31
AD4
B
329 343Right-handed alpha
Helix 32
AD5
B
356 367Right-handed alpha
Helix 33
AD6
C
16 29Right-handed alpha
Helix 34
AD7
C
70 87Right-handed alpha
Helix 35
AD8
C
109 114Right-handed alpha
Helix 36
AD9
C
117 133Right-handed alpha
Helix 37
AE1
C
140 145Right-handed alpha
Helix 38
AE2
C
149 154Right-handed alpha
Helix 39
AE3
C
154 159Right-handed alpha
Helix 40
AE4
C
169 181Right-handed alpha
Helix 41
AE5
C
188 207Right-handed alpha
Helix 42
AE6
C
218 232Right-handed alpha
Helix 43
AE7
C
248 258Right-handed alpha
Helix 44
AE8
C
259 268Right-handed alpha
Helix 45
AE9
C
271 287Right-handed alpha
Helix 46
AF1
C
302 325Right-handed alpha
Helix 47
AF2
C
329 345Right-handed alpha
Helix 48
AF3
C
346 348Right-handed 310
Helix 49
AF4
C
356 370Right-handed alpha
Helix 50
AF5
C
378 383Right-handed alpha
Helix 51
AF6
D
17 27Right-handed alpha
Helix 52
AF7
D
71 86Right-handed alpha
Helix 53
AF8
D
108 115Right-handed alpha
Helix 54
AF9
D
117 130Right-handed alpha
Helix 55
AG1
D
136 147Right-handed alpha
Helix 56
AG2
D
150 159Right-handed alpha
Helix 57
AG3
D
168 181Right-handed alpha
Helix 58
AG4
D
188 210Right-handed alpha
Helix 59
AG5
D
218 230Right-handed alpha
Helix 60
AG6
D
248 258Right-handed alpha
Helix 61
AG7
D
259 268Right-handed alpha
Helix 62
AG8
D
271 294Right-handed alpha
Helix 63
AG9
D
299 301Right-handed 310
Helix 64
AH1
D
302 325Right-handed alpha
Helix 65
AH2
D
329 345Right-handed alpha
Helix 66
AH3
D
346 348Right-handed 310
Helix 67
AH4
D
356 370Right-handed alpha
Helix 68
AH5
D
378 383Right-handed alpha
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There are 5 sheets in PDB entry 9NY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
94 99parallel
Strand 3
A
161 163parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
353 354anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
35 38parallel
Strand 3
B
216 217anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 164first strand
Strand 2
C
94 100parallel
Strand 3
C
34 40parallel
Strand 4
C
215 216anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 164first strand
Strand 2
D
94 100parallel
Strand 3
D
33 34parallel
Strand 4
D
216 217anti-parallel
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