Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NY2 entry

There are 7 chains in PDB entry 9NY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 317
B	MET 1	VAL 317
C	MET 1	VAL 317
D	MET 1	VAL 317
E	MET 1	VAL 317
F	MET 1	VAL 317
G	MET 1	VAL 317

There are 56 helices in PDB entry 9NY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	38	Right-handed alpha
Helix 2	AA2	A	96	99	Right-handed 310
Helix 3	AA3	A	107	130	Right-handed alpha
Helix 4	AA4	A	148	152	Right-handed 310
Helix 5	AA5	A	183	197	Right-handed alpha
Helix 6	AA6	A	207	218	Right-handed alpha
Helix 7	AA7	A	265	267	Right-handed 310
Helix 8	AA8	A	303	307	Right-handed 310
Helix 9	AA9	B	32	38	Right-handed alpha
Helix 10	AB1	B	96	99	Right-handed 310
Helix 11	AB2	B	107	130	Right-handed alpha
Helix 12	AB3	B	148	152	Right-handed 310
Helix 13	AB4	B	183	197	Right-handed alpha
Helix 14	AB5	B	207	217	Right-handed alpha
Helix 15	AB6	B	265	267	Right-handed 310
Helix 16	AB7	B	303	307	Right-handed 310
Helix 17	AB8	C	32	38	Right-handed alpha
Helix 18	AB9	C	95	100	Right-handed alpha
Helix 19	AC1	C	107	130	Right-handed alpha
Helix 20	AC2	C	148	152	Right-handed 310
Helix 21	AC3	C	183	198	Right-handed alpha
Helix 22	AC4	C	207	217	Right-handed alpha
Helix 23	AC5	C	265	267	Right-handed 310
Helix 24	AC6	C	303	307	Right-handed 310
Helix 25	AC7	D	32	38	Right-handed alpha
Helix 26	AC8	D	95	100	Right-handed alpha
Helix 27	AC9	D	107	130	Right-handed alpha
Helix 28	AD1	D	148	152	Right-handed 310
Helix 29	AD2	D	183	197	Right-handed alpha
Helix 30	AD3	D	207	217	Right-handed alpha
Helix 31	AD4	D	265	267	Right-handed 310
Helix 32	AD5	D	303	307	Right-handed 310
Helix 33	AD6	E	32	38	Right-handed alpha
Helix 34	AD7	E	95	100	Right-handed alpha
Helix 35	AD8	E	107	130	Right-handed alpha
Helix 36	AD9	E	148	152	Right-handed 310
Helix 37	AE1	E	183	197	Right-handed alpha
Helix 38	AE2	E	207	218	Right-handed alpha
Helix 39	AE3	E	265	267	Right-handed 310
Helix 40	AE4	E	303	307	Right-handed 310
Helix 41	AE5	F	32	38	Right-handed alpha
Helix 42	AE6	F	95	100	Right-handed alpha
Helix 43	AE7	F	107	130	Right-handed alpha
Helix 44	AE8	F	148	152	Right-handed 310
Helix 45	AE9	F	183	197	Right-handed alpha
Helix 46	AF1	F	207	217	Right-handed alpha
Helix 47	AF2	F	265	267	Right-handed 310
Helix 48	AF3	F	303	307	Right-handed 310
Helix 49	AF4	G	32	38	Right-handed alpha
Helix 50	AF5	G	96	99	Right-handed 310
Helix 51	AF6	G	107	130	Right-handed alpha
Helix 52	AF7	G	148	152	Right-handed 310
Helix 53	AF8	G	183	198	Right-handed alpha
Helix 54	AF9	G	207	217	Right-handed alpha
Helix 55	AG1	G	265	267	Right-handed 310
Helix 56	AG2	G	303	307	Right-handed 310

There are 29 sheets in PDB entry 9NY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	C	47	52	parallel
Strand 3	C	78	83	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	269	281	parallel
Strand 3	A	288	301	anti-parallel
Strand 4	A	85	94	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	B	20	25	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	313	314	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	260	264	anti-parallel
Strand 3	A	203	206	anti-parallel
Strand 4	A	247	252	parallel
Strand 5	A	240	243	anti-parallel
Strand 6	B	233	236	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	B	226	228	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	C	240	242	parallel
Strand 3	C	247	252	anti-parallel
Strand 4	C	203	206	parallel
Strand 5	C	260	264	anti-parallel
Strand 6	C	308	311	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	269	281	parallel
Strand 3	B	288	301	anti-parallel
Strand 4	B	85	94	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	F	20	25	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	313	314	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	311	first strand
Strand 2	B	260	264	anti-parallel
Strand 3	B	203	206	anti-parallel
Strand 4	B	247	252	parallel
Strand 5	B	240	242	anti-parallel
Strand 6	F	233	235	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	D	47	52	parallel
Strand 3	D	78	83	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	269	281	parallel
Strand 3	C	288	301	anti-parallel
Strand 4	C	85	94	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	C	313	314	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	228	first strand
Strand 2	D	224	226	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	235	first strand
Strand 2	D	240	242	parallel
Strand 3	D	247	252	anti-parallel
Strand 4	D	203	206	parallel
Strand 5	D	260	264	anti-parallel
Strand 6	D	308	311	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	25	first strand
Strand 2	E	48	52	parallel
Strand 3	E	78	82	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	269	281	parallel
Strand 3	D	288	301	anti-parallel
Strand 4	D	85	94	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	181	first strand
Strand 2	D	313	314	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	236	first strand
Strand 2	E	240	243	parallel
Strand 3	E	247	252	anti-parallel
Strand 4	E	203	206	parallel
Strand 5	E	260	264	anti-parallel
Strand 6	E	308	311	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	25	first strand
Strand 2	F	47	52	parallel
Strand 3	F	78	83	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	42	first strand
Strand 2	E	269	281	parallel
Strand 3	E	288	301	anti-parallel
Strand 4	E	85	94	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	234	first strand
Strand 2	F	240	242	parallel
Strand 3	F	247	252	anti-parallel
Strand 4	F	203	206	parallel
Strand 5	F	260	264	anti-parallel
Strand 6	F	308	311	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	42	first strand
Strand 2	F	269	281	parallel
Strand 3	F	288	301	anti-parallel
Strand 4	F	85	94	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	180	181	first strand
Strand 2	F	313	314	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	42	first strand
Strand 2	G	269	281	parallel
Strand 3	G	288	301	anti-parallel
Strand 4	G	85	94	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	52	first strand
Strand 2	G	78	83	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	181	first strand
Strand 2	G	313	314	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	242	first strand
Strand 2	G	247	252	anti-parallel
Strand 3	G	203	206	parallel
Strand 4	G	260	264	anti-parallel
Strand 5	G	308	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY2