Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NY5 entry

There are 4 chains in PDB entry 9NY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLN 8PHE 178
A
 SER 10GLY 384
D
 ASP 229GLY 443
B
 SER 286ARG 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9NY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
14 22Right-handed alpha
Helix 2
AA2
C
25 45Right-handed alpha
Helix 3
AA3
C
52 54Right-handed 310
Helix 4
AA4
C
55 61Right-handed alpha
Helix 5
AA5
C
65 70Right-handed alpha
Helix 6
AA6
C
76 85Right-handed alpha
Helix 7
AA7
C
93 97Right-handed 310
Helix 8
AA8
C
98 104Right-handed alpha
Helix 9
AA9
C
104 117Right-handed alpha
Helix 10
AB1
C
145 162Right-handed alpha
Helix 11
AB2
A
16 28Right-handed alpha
Helix 12
AB3
A
70 80Right-handed alpha
Helix 13
AB4
A
80 86Right-handed alpha
Helix 14
AB5
A
107 114Right-handed alpha
Helix 15
AB6
A
117 130Right-handed alpha
Helix 16
AB7
A
136 147Right-handed alpha
Helix 17
AB8
A
149 159Right-handed alpha
Helix 18
AB9
A
168 181Right-handed alpha
Helix 19
AC1
A
189 210Right-handed alpha
Helix 20
AC2
A
217 235Right-handed alpha
Helix 21
AC3
A
237 242Right-handed alpha
Helix 22
AC4
A
259 269Right-handed alpha
Helix 23
AC5
A
271 295Right-handed alpha
Helix 24
AC6
A
301 326Right-handed alpha
Helix 25
AC7
A
329 343Right-handed alpha
Helix 26
AC8
A
356 370Right-handed alpha
Helix 27
AC9
D
230 241Right-handed alpha
Helix 28
AD1
D
257 271Right-handed alpha
Helix 29
AD2
D
278 317Right-handed alpha
Helix 30
AD3
D
335 345Right-handed alpha
Helix 31
AD4
D
356 361Right-handed alpha
Helix 32
AD5
D
361 376Right-handed alpha
Helix 33
AD6
D
386 416Right-handed alpha
Helix 34
AD7
D
424 439Right-handed alpha
Helix 35
AD8
D
440 442Right-handed 310
Helix 36
AD9
B
287 335Right-handed alpha
Helix 37
AE1
B
336 347Right-handed alpha
Helix 38
AE2
B
356 375Right-handed alpha
Helix 39
AE3
B
379 415Right-handed alpha
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There are 2 sheets in PDB entry 9NY5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
130 132anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
95 99parallel
Strand 3
A
34 35parallel
Strand 4
A
215 216anti-parallel
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