Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NY6 entry

There are 3 chains in PDB entry 9NY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 1ALA 294
D
 ALA 1ALA 294
E
 ALA 1ALA 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9NY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
55 61Right-handed alpha
Helix 2
AA2
D
7 10Right-handed 310
Helix 3
AA3
D
55 61Right-handed alpha
Helix 4
AA4
D
210 214Right-handed 310
Helix 5
AA5
D
264 266Right-handed 310
Helix 6
AA6
E
7 10Right-handed 310
Helix 7
AA7
E
55 63Right-handed alpha
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There are 15 sheets in PDB entry 9NY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
15 16anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 34first strand
Strand 2
C
23 26anti-parallel
Strand 3
D
13 18parallel
Strand 4
D
3 6anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 47first strand
Strand 2
E
65 71parallel
Strand 3
D
83 92parallel
Strand 4
C
108 117parallel
Strand 5
E
121 125parallel
Strand 6
D
138 142parallel
Strand 7
C
158 166parallel
Strand 8
E
176 183parallel
Strand 9
D
189 192parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 47first strand
Strand 2
E
65 71parallel
Strand 3
D
83 92parallel
Strand 4
C
108 117parallel
Strand 5
E
129 133parallel
Strand 6
D
145 148parallel
Strand 7
C
158 166parallel
Strand 8
E
176 183parallel
Strand 9
D
189 192parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 47first strand
Strand 2
C
65 71parallel
Strand 3
E
86 92parallel
Strand 4
D
112 117parallel
Strand 5
C
128 133parallel
Strand 6
E
137 148parallel
Strand 7
D
157 166parallel
Strand 8
C
176 183parallel
Strand 9
E
189 192parallel
Strand 10
D
195 197parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 47first strand
Strand 2
C
65 71parallel
Strand 3
E
86 92parallel
Strand 4
D
112 117parallel
Strand 5
C
128 133parallel
Strand 6
E
137 148parallel
Strand 7
C
121 125parallel
Strand 8
D
102 109parallel
Strand 9
E
83 84parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
E
108 109parallel
Strand 3
D
121 125parallel
Strand 4
C
138 148parallel
Strand 5
E
158 166parallel
Strand 6
D
179 183parallel
Strand 7
C
188 190parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
E
108 109parallel
Strand 3
D
121 125parallel
Strand 4
C
138 148parallel
Strand 5
D
128 133parallel
Strand 6
E
112 117parallel
Strand 7
C
87 92parallel
Strand 8
D
66 70parallel
Strand 9
E
42 46parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 203first strand
Strand 2
C
217 220parallel
Strand 3
C
239 244parallel
Strand 4
C
276 281anti-parallel
Strand 5
C
285 290anti-parallel
Strand 6
C
259 262parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 209first strand
Strand 2
C
226 230parallel
Strand 3
C
250 254parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 34first strand
Strand 2
D
23 26anti-parallel
Strand 3
E
14 18parallel
Strand 4
E
3 5anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 203first strand
Strand 2
D
217 220parallel
Strand 3
D
239 243parallel
Strand 4
D
275 281anti-parallel
Strand 5
D
285 291anti-parallel
Strand 6
D
259 262parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
207 209first strand
Strand 2
D
226 230parallel
Strand 3
D
250 254parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
200 203first strand
Strand 2
E
217 220parallel
Strand 3
E
239 244parallel
Strand 4
E
275 281anti-parallel
Strand 5
E
285 290anti-parallel
Strand 6
E
259 262parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
207 209first strand
Strand 2
E
226 230parallel
Strand 3
E
250 254parallel
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