Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NY7 entry

There are 5 chains in PDB entry 9NY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 52	ALA 330
B	SER 1	ALA 330
C	SER 53	ALA 330
D	GLN 58	ALA 330
E	ARG 52	THR 169

There are 57 helices in PDB entry 9NY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	88	Right-handed alpha
Helix 2	AA2	A	103	114	Right-handed alpha
Helix 3	AA3	A	130	137	Right-handed alpha
Helix 4	AA4	A	160	175	Right-handed alpha
Helix 5	AA5	A	189	206	Right-handed alpha
Helix 6	AA6	A	221	233	Right-handed alpha
Helix 7	AA7	A	246	260	Right-handed alpha
Helix 8	AA8	A	276	282	Right-handed 310
Helix 9	AA9	A	292	310	Right-handed alpha
Helix 10	AB1	B	3	12	Right-handed alpha
Helix 11	AB2	B	14	24	Right-handed alpha
Helix 12	AB3	B	29	44	Right-handed alpha
Helix 13	AB4	B	71	88	Right-handed alpha
Helix 14	AB5	B	100	114	Right-handed alpha
Helix 15	AB6	B	130	135	Right-handed alpha
Helix 16	AB7	B	160	175	Right-handed alpha
Helix 17	AB8	B	189	206	Right-handed alpha
Helix 18	AB9	B	221	233	Right-handed alpha
Helix 19	AC1	B	246	260	Right-handed alpha
Helix 20	AC2	B	276	282	Right-handed 310
Helix 21	AC3	B	292	310	Right-handed alpha
Helix 22	AC4	C	71	88	Right-handed alpha
Helix 23	AC5	C	100	114	Right-handed alpha
Helix 24	AC6	C	130	137	Right-handed alpha
Helix 25	AC7	C	160	175	Right-handed alpha
Helix 26	AC8	C	189	206	Right-handed alpha
Helix 27	AC9	C	221	233	Right-handed alpha
Helix 28	AD1	C	246	260	Right-handed alpha
Helix 29	AD2	C	276	282	Right-handed 310
Helix 30	AD3	C	292	310	Right-handed alpha
Helix 31	AD4	D	71	88	Right-handed alpha
Helix 32	AD5	D	100	114	Right-handed alpha
Helix 33	AD6	D	130	137	Right-handed alpha
Helix 34	AD7	D	160	175	Right-handed alpha
Helix 35	AD8	D	189	206	Right-handed alpha
Helix 36	AD9	D	221	233	Right-handed alpha
Helix 37	AE1	D	246	260	Right-handed alpha
Helix 38	AE2	D	276	282	Right-handed 310
Helix 39	AE3	D	292	310	Right-handed alpha
Helix 40	AE4	E	71	88	Right-handed alpha
Helix 41	AE5	E	100	114	Right-handed alpha
Helix 42	AE6	E	130	135	Right-handed alpha
Helix 43	AE7	E	160	175	Right-handed alpha
Helix 44	AE8	E	189	206	Right-handed alpha
Helix 45	AE9	E	221	233	Right-handed alpha
Helix 46	AF1	E	246	260	Right-handed alpha
Helix 47	AF2	E	276	282	Right-handed 310
Helix 48	AF3	E	292	310	Right-handed alpha
Helix 49	AF4	F	71	88	Right-handed alpha
Helix 50	AF5	F	100	114	Right-handed alpha
Helix 51	AF6	F	130	137	Right-handed alpha
Helix 52	AF7	F	160	175	Right-handed alpha
Helix 53	AF8	F	189	206	Right-handed alpha
Helix 54	AF9	F	221	233	Right-handed alpha
Helix 55	AG1	F	246	260	Right-handed alpha
Helix 56	AG2	F	276	282	Right-handed 310
Helix 57	AG3	F	292	310	Right-handed alpha

There are 18 sheets in PDB entry 9NY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	97	first strand
Strand 2	A	61	67	parallel
Strand 3	A	118	122	parallel
Strand 4	A	142	145	parallel
Strand 5	A	155	159	parallel
Strand 6	A	317	320	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	180	184	parallel
Strand 3	A	241	243	parallel
Strand 4	A	269	271	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	323	325	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	61	67	parallel
Strand 3	B	118	122	parallel
Strand 4	B	142	145	parallel
Strand 5	B	155	159	parallel
Strand 6	B	317	320	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	180	184	parallel
Strand 3	B	241	244	parallel
Strand 4	B	269	271	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	323	325	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	97	first strand
Strand 2	C	61	67	parallel
Strand 3	C	118	122	parallel
Strand 4	C	142	145	parallel
Strand 5	C	155	159	parallel
Strand 6	C	317	320	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	180	184	parallel
Strand 3	C	241	243	parallel
Strand 4	C	269	271	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	290	first strand
Strand 2	C	323	325	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	97	first strand
Strand 2	D	61	67	parallel
Strand 3	D	118	122	parallel
Strand 4	D	142	145	parallel
Strand 5	D	155	159	parallel
Strand 6	D	317	320	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	217	first strand
Strand 2	D	180	184	parallel
Strand 3	D	241	243	parallel
Strand 4	D	269	271	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	323	325	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	97	first strand
Strand 2	E	61	67	parallel
Strand 3	E	118	122	parallel
Strand 4	E	142	145	parallel
Strand 5	E	155	159	parallel
Strand 6	E	317	320	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	217	first strand
Strand 2	E	180	184	parallel
Strand 3	E	241	244	parallel
Strand 4	E	269	271	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	290	first strand
Strand 2	E	323	325	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	97	first strand
Strand 2	F	61	67	parallel
Strand 3	F	118	122	parallel
Strand 4	F	142	145	parallel
Strand 5	F	155	159	parallel
Strand 6	F	317	320	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	217	first strand
Strand 2	F	180	184	parallel
Strand 3	F	241	243	parallel
Strand 4	F	269	271	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	288	290	first strand
Strand 2	F	323	325	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY7