Analysis of interatomic Contacts of Structural Units in PDB entry:
9NY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NY8 entry

There are 4 chains in PDB entry 9NY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 330
B
 SER 1ALA 330
C
 G 1 G 30
D
 C 1 C 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 9NY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
14 24Right-handed alpha
Helix 3
AA3
A
29 44Right-handed alpha
Helix 4
AA4
A
48 57Right-handed alpha
Helix 5
AA5
A
71 88Right-handed alpha
Helix 6
AA6
A
100 114Right-handed alpha
Helix 7
AA7
A
130 137Right-handed alpha
Helix 8
AA8
A
160 175Right-handed alpha
Helix 9
AA9
A
189 206Right-handed alpha
Helix 10
AB1
A
211 213Right-handed 310
Helix 11
AB2
A
221 234Right-handed alpha
Helix 12
AB3
A
246 260Right-handed alpha
Helix 13
AB4
A
276 282Right-handed 310
Helix 14
AB5
A
293 310Right-handed alpha
Helix 15
AB6
B
3 12Right-handed alpha
Helix 16
AB7
B
14 24Right-handed alpha
Helix 17
AB8
B
29 44Right-handed alpha
Helix 18
AB9
B
48 57Right-handed alpha
Helix 19
AC1
B
71 88Right-handed alpha
Helix 20
AC2
B
100 114Right-handed alpha
Helix 21
AC3
B
130 137Right-handed alpha
Helix 22
AC4
B
160 175Right-handed alpha
Helix 23
AC5
B
189 206Right-handed alpha
Helix 24
AC6
B
211 213Right-handed 310
Helix 25
AC7
B
221 234Right-handed alpha
Helix 26
AC8
B
246 260Right-handed alpha
Helix 27
AC9
B
276 282Right-handed 310
Helix 28
AD1
B
293 310Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9NY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
61 66parallel
Strand 3
A
118 122parallel
Strand 4
A
142 145parallel
Strand 5
A
155 158parallel
Strand 6
A
317 319parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
180 184parallel
Strand 3
A
241 244parallel
Strand 4
A
269 274parallel
Strand 5
A
287 290parallel
Strand 6
A
323 325anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
B
61 66parallel
Strand 3
B
118 122parallel
Strand 4
B
142 145parallel
Strand 5
B
155 158parallel
Strand 6
B
317 319parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
180 184parallel
Strand 3
B
241 244parallel
Strand 4
B
269 272parallel
Strand 5
B
287 290parallel
Strand 6
B
323 325anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il