Analysis of interatomic Contacts of Structural Units in PDB entry:
9NYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NYG entry

There are 6 chains in PDB entry 9NYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLN 8PHE 178
A
 ILE 17ASP 380
G
 ASP 229GLY 443
B
 MET 1TRP 652
E
 G 12 T 26
F
 A 47 A 62
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9NYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
34 44Right-handed alpha
Helix 2
AA2
C
66 71Right-handed alpha
Helix 3
AA3
C
75 83Right-handed alpha
Helix 4
AA4
C
92 94Right-handed 310
Helix 5
AA5
C
95 100Right-handed alpha
Helix 6
AA6
C
147 162Right-handed alpha
Helix 7
AA7
C
166 174Right-handed alpha
Helix 8
AA8
A
21 28Right-handed alpha
Helix 9
AA9
A
171 179Right-handed alpha
Helix 10
AB1
A
188 209Right-handed alpha
Helix 11
AB2
A
217 238Right-handed alpha
Helix 12
AB3
A
264 269Right-handed alpha
Helix 13
AB4
A
272 296Right-handed alpha
Helix 14
AB5
A
299 302Right-handed 310
Helix 15
AB6
A
303 308Right-handed alpha
Helix 16
AB7
A
309 313Right-handed 310
Helix 17
AB8
A
319 325Right-handed alpha
Helix 18
AB9
A
331 333Right-handed 310
Helix 19
AC1
A
334 342Right-handed alpha
Helix 20
AC2
A
361 368Right-handed alpha
Helix 21
AC3
G
230 234Right-handed alpha
Helix 22
AC4
G
239 245Right-handed alpha
Helix 23
AC5
G
278 314Right-handed alpha
Helix 24
AC6
G
315 317Right-handed 310
Helix 25
AC7
G
356 360Right-handed alpha
Helix 26
AC8
G
361 374Right-handed alpha
Helix 27
AC9
G
386 416Right-handed alpha
Helix 28
AD1
G
426 440Right-handed alpha
Helix 29
AD2
B
39 41Right-handed 310
Helix 30
AD3
B
42 52Right-handed alpha
Helix 31
AD4
B
117 130Right-handed alpha
Helix 32
AD5
B
152 156Right-handed 310
Helix 33
AD6
B
161 166Right-handed alpha
Helix 34
AD7
B
181 186Right-handed alpha
Helix 35
AD8
B
187 192Right-handed alpha
Helix 36
AD9
B
196 201Right-handed alpha
Helix 37
AE1
B
201 217Right-handed alpha
Helix 38
AE2
B
227 233Right-handed alpha
Helix 39
AE3
B
237 244Right-handed alpha
Helix 40
AE4
B
252 256Right-handed 310
Helix 41
AE5
B
257 267Right-handed alpha
Helix 42
AE6
B
294 305Right-handed alpha
Helix 43
AE7
B
306 333Right-handed alpha
Helix 44
AE8
B
362 370Right-handed alpha
Helix 45
AE9
B
379 408Right-handed alpha
Helix 46
AF1
B
426 432Right-handed alpha
Helix 47
AF2
B
433 442Right-handed alpha
Helix 48
AF3
B
451 456Right-handed alpha
Helix 49
AF4
B
461 469Right-handed alpha
Helix 50
AF5
B
470 488Right-handed alpha
Helix 51
AF6
B
489 492Right-handed 310
Helix 52
AF7
B
532 552Right-handed alpha
Helix 53
AF8
B
566 569Right-handed 310
Helix 54
AF9
B
595 610Right-handed alpha
Helix 55
AG1
B
625 629Right-handed 310
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There are 2 sheets in PDB entry 9NYG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
4 12anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
80 86anti-parallel
Strand 5
B
97 100anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
560 564parallel
Strand 3
B
617 622parallel
Strand 4
B
29 33parallel
Strand 5
B
636 637parallel
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