Analysis of interatomic Contacts of Structural Units in PDB entry:
9NYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NYM entry

There are 2 chains in PDB entry 9NYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 320VAL 466
B
 ALA 320VAL 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9NYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 338Right-handed 310
Helix 2
AA2
A
339 346Right-handed alpha
Helix 3
AA3
A
362 366Right-handed 310
Helix 4
AA4
A
383 385Right-handed 310
Helix 5
AA5
A
386 400Right-handed alpha
Helix 6
AA6
A
413 427Right-handed alpha
Helix 7
AA7
A
430 442Right-handed alpha
Helix 8
AA8
A
448 464Right-handed alpha
Helix 9
AA9
B
335 338Right-handed 310
Helix 10
AB1
B
339 346Right-handed alpha
Helix 11
AB2
B
362 366Right-handed 310
Helix 12
AB3
B
383 385Right-handed 310
Helix 13
AB4
B
386 400Right-handed alpha
Helix 14
AB5
B
413 428Right-handed alpha
Helix 15
AB6
B
430 442Right-handed alpha
Helix 16
AB7
B
448 464Right-handed alpha
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There are 2 sheets in PDB entry 9NYM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
329 332anti-parallel
Strand 3
A
403 407parallel
Strand 4
A
348 353parallel
Strand 5
A
369 372parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 326first strand
Strand 2
B
329 332anti-parallel
Strand 3
B
403 407parallel
Strand 4
B
348 353parallel
Strand 5
B
369 372parallel
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