Analysis of interatomic Contacts of Structural Units in PDB entry:
9NYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NYU entry

There are 2 chains in PDB entry 9NYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 315
K
 MET 1GLU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9NYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
37 56Right-handed alpha
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
86 97Right-handed alpha
Helix 5
AA5
A
107 111Right-handed 310
Helix 6
AA6
A
185 192Right-handed alpha
Helix 7
AA7
A
195 214Right-handed alpha
Helix 8
AA8
A
219 226Right-handed alpha
Helix 9
AA9
A
228 242Right-handed alpha
Helix 10
AB1
A
249 260Right-handed alpha
Helix 11
AB2
A
260 267Right-handed alpha
Helix 12
AB3
A
280 292Right-handed alpha
Helix 13
AB4
K
2 16Right-handed alpha
Helix 14
AB5
K
37 56Right-handed alpha
Helix 15
AB6
K
86 97Right-handed alpha
Helix 16
AB7
K
107 111Right-handed 310
Helix 17
AB8
K
185 192Right-handed alpha
Helix 18
AB9
K
195 214Right-handed alpha
Helix 19
AC1
K
219 226Right-handed alpha
Helix 20
AC2
K
228 242Right-handed alpha
Helix 21
AC3
K
249 260Right-handed alpha
Helix 22
AC4
K
260 267Right-handed alpha
Helix 23
AC5
K
280 292Right-handed alpha
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There are 6 sheets in PDB entry 9NYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
17 26anti-parallel
Strand 3
A
115 124anti-parallel
Strand 4
A
127 134anti-parallel
Strand 5
A
174 177anti-parallel
Strand 6
A
180 183anti-parallel
Strand 7
A
78 79anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
157 159anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
295 298anti-parallel
Strand 3
K
295 297anti-parallel
Strand 4
K
304 306anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
31 33first strand
Strand 2
K
17 26anti-parallel
Strand 3
K
115 124anti-parallel
Strand 4
K
127 134anti-parallel
Strand 5
K
174 177anti-parallel
Strand 6
K
180 183anti-parallel
Strand 7
K
78 79anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
144 145first strand
Strand 2
K
157 158anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
268 269first strand
Strand 2
K
276 277anti-parallel
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