Analysis of interatomic Contacts of Structural Units in PDB entry:
9NYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NYY entry

There are 4 chains in PDB entry 9NYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	TYR 906
B	SER 3	TYR 906
C	A 1	G 5
D	C 1	C 7

There are 70 helices in PDB entry 9NYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	34	55	Right-handed alpha
Helix 3	AA3	A	70	75	Right-handed alpha
Helix 4	AA4	A	78	88	Right-handed alpha
Helix 5	AA5	A	142	155	Right-handed alpha
Helix 6	AA6	A	180	184	Right-handed 310
Helix 7	AA7	A	186	193	Right-handed alpha
Helix 8	AA8	A	220	228	Right-handed alpha
Helix 9	AA9	A	228	238	Right-handed alpha
Helix 10	AB1	A	258	262	Right-handed 310
Helix 11	AB2	A	263	277	Right-handed alpha
Helix 12	AB3	A	340	349	Right-handed alpha
Helix 13	AB4	A	382	395	Right-handed alpha
Helix 14	AB5	A	406	417	Right-handed alpha
Helix 15	AB6	A	418	428	Right-handed alpha
Helix 16	AB7	A	441	447	Right-handed alpha
Helix 17	AB8	A	480	499	Right-handed alpha
Helix 18	AB9	A	530	534	Right-handed 310
Helix 19	AC1	A	537	555	Right-handed alpha
Helix 20	AC2	A	557	580	Right-handed alpha
Helix 21	AC3	A	581	584	Right-handed 310
Helix 22	AC4	A	598	614	Right-handed alpha
Helix 23	AC5	A	617	619	Right-handed 310
Helix 24	AC6	A	627	638	Right-handed alpha
Helix 25	AC7	A	645	649	Right-handed alpha
Helix 26	AC8	A	673	683	Right-handed alpha
Helix 27	AC9	A	718	722	Right-handed 310
Helix 28	AD1	A	735	752	Right-handed alpha
Helix 29	AD2	A	760	764	Right-handed 310
Helix 30	AD3	A	766	778	Right-handed alpha
Helix 31	AD4	A	790	809	Right-handed alpha
Helix 32	AD5	A	811	813	Right-handed 310
Helix 33	AD6	A	821	823	Right-handed 310
Helix 34	AD7	A	824	839	Right-handed alpha
Helix 35	AD8	A	851	855	Right-handed 310
Helix 36	AD9	A	890	896	Right-handed alpha
Helix 37	AE1	B	34	55	Right-handed alpha
Helix 38	AE2	B	70	75	Right-handed alpha
Helix 39	AE3	B	78	88	Right-handed alpha
Helix 40	AE4	B	142	155	Right-handed alpha
Helix 41	AE5	B	181	184	Right-handed 310
Helix 42	AE6	B	220	228	Right-handed alpha
Helix 43	AE7	B	228	239	Right-handed alpha
Helix 44	AE8	B	267	275	Right-handed alpha
Helix 45	AE9	B	340	349	Right-handed alpha
Helix 46	AF1	B	382	395	Right-handed alpha
Helix 47	AF2	B	406	417	Right-handed alpha
Helix 48	AF3	B	419	429	Right-handed alpha
Helix 49	AF4	B	441	446	Right-handed alpha
Helix 50	AF5	B	480	499	Right-handed alpha
Helix 51	AF6	B	530	534	Right-handed 310
Helix 52	AF7	B	537	554	Right-handed alpha
Helix 53	AF8	B	557	580	Right-handed alpha
Helix 54	AF9	B	581	585	Right-handed 310
Helix 55	AG1	B	598	614	Right-handed alpha
Helix 56	AG2	B	617	619	Right-handed 310
Helix 57	AG3	B	627	638	Right-handed alpha
Helix 58	AG4	B	645	649	Right-handed alpha
Helix 59	AG5	B	663	667	Right-handed 310
Helix 60	AG6	B	668	672	Right-handed 310
Helix 61	AG7	B	673	683	Right-handed alpha
Helix 62	AG8	B	718	722	Right-handed 310
Helix 63	AG9	B	735	752	Right-handed alpha
Helix 64	AH1	B	760	764	Right-handed 310
Helix 65	AH2	B	766	778	Right-handed alpha
Helix 66	AH3	B	790	809	Right-handed alpha
Helix 67	AH4	B	811	813	Right-handed 310
Helix 68	AH5	B	823	838	Right-handed alpha
Helix 69	AH6	B	851	855	Right-handed 310
Helix 70	AH7	B	890	897	Right-handed alpha

There are 15 sheets in PDB entry 9NYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	22	first strand
Strand 2	A	58	64	parallel
Strand 3	A	104	109	anti-parallel
Strand 4	A	96	101	anti-parallel
Strand 5	B	178	179	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	138	140	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	298	300	parallel
Strand 3	A	305	307	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	241	245	parallel
Strand 3	A	310	314	anti-parallel
Strand 4	A	292	296	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	332	first strand
Strand 2	A	335	338	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	405	first strand
Strand 2	A	434	439	parallel
Strand 3	A	454	461	anti-parallel
Strand 4	A	467	473	anti-parallel
Strand 5	A	508	514	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	644	first strand
Strand 2	A	621	625	parallel
Strand 3	A	658	661	parallel
Strand 4	A	699	703	parallel
Strand 5	A	588	593	parallel
Strand 6	A	725	728	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	786	first strand
Strand 2	A	898	905	parallel
Strand 3	A	873	879	parallel
Strand 4	A	815	819	parallel
Strand 5	A	860	864	parallel
Strand 6	A	849	850	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	22	first strand
Strand 2	B	58	64	parallel
Strand 3	B	104	109	anti-parallel
Strand 4	B	96	101	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	139	140	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	213	first strand
Strand 2	B	241	245	parallel
Strand 3	B	305	314	anti-parallel
Strand 4	B	292	300	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	335	338	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	435	439	parallel
Strand 3	B	454	461	anti-parallel
Strand 4	B	467	473	anti-parallel
Strand 5	B	508	514	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	644	first strand
Strand 2	B	621	625	parallel
Strand 3	B	658	661	parallel
Strand 4	B	699	703	parallel
Strand 5	B	590	593	parallel
Strand 6	B	725	728	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	786	first strand
Strand 2	B	898	905	parallel
Strand 3	B	873	879	parallel
Strand 4	B	815	819	parallel
Strand 5	B	860	864	parallel
Strand 6	B	849	850	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NYY