Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NZ0 entry

There are 9 chains in PDB entry 9NZ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	ILE 469
B	SER 22	ILE 469
C	SER 22	ILE 469
D	GLN 3	SER 115
E	ASP 1	THR 109
F	GLN 3	SER 115
G	ASP 1	THR 109
H	ASP 1	THR 109
I	GLN 3	SER 115

There are 42 helices in PDB entry 9NZ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed alpha
Helix 2	AA2	A	67	92	Right-handed alpha
Helix 3	AA3	A	149	186	Right-handed alpha
Helix 4	AA4	A	188	215	Right-handed alpha
Helix 5	AA5	A	222	230	Right-handed alpha
Helix 6	AA6	A	233	242	Right-handed alpha
Helix 7	AA7	A	246	255	Right-handed alpha
Helix 8	AA8	A	322	326	Right-handed 310
Helix 9	AA9	A	344	352	Right-handed alpha
Helix 10	AB1	A	452	457	Right-handed alpha
Helix 11	AB2	A	457	469	Right-handed alpha
Helix 12	AB3	B	24	29	Right-handed alpha
Helix 13	AB4	B	67	92	Right-handed alpha
Helix 14	AB5	B	149	186	Right-handed alpha
Helix 15	AB6	B	188	215	Right-handed alpha
Helix 16	AB7	B	222	230	Right-handed alpha
Helix 17	AB8	B	233	242	Right-handed alpha
Helix 18	AB9	B	246	255	Right-handed alpha
Helix 19	AC1	B	322	326	Right-handed 310
Helix 20	AC2	B	344	352	Right-handed alpha
Helix 21	AC3	B	452	457	Right-handed alpha
Helix 22	AC4	B	457	469	Right-handed alpha
Helix 23	AC5	C	24	29	Right-handed alpha
Helix 24	AC6	C	67	92	Right-handed alpha
Helix 25	AC7	C	149	186	Right-handed alpha
Helix 26	AC8	C	188	215	Right-handed alpha
Helix 27	AC9	C	222	230	Right-handed alpha
Helix 28	AD1	C	233	242	Right-handed alpha
Helix 29	AD2	C	246	255	Right-handed alpha
Helix 30	AD3	C	322	326	Right-handed 310
Helix 31	AD4	C	344	352	Right-handed alpha
Helix 32	AD5	C	452	457	Right-handed alpha
Helix 33	AD6	C	457	469	Right-handed alpha
Helix 34	AD7	D	28	32	Right-handed 310
Helix 35	AD8	D	83	87	Right-handed 310
Helix 36	AD9	E	79	83	Right-handed 310
Helix 37	AE1	F	28	32	Right-handed 310
Helix 38	AE2	F	83	87	Right-handed 310
Helix 39	AE3	G	79	83	Right-handed 310
Helix 40	AE4	H	79	83	Right-handed 310
Helix 41	AE5	I	28	32	Right-handed 310
Helix 42	AE6	I	83	87	Right-handed 310

There are 33 sheets in PDB entry 9NZ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	310	313	anti-parallel
Strand 3	A	281	293	anti-parallel
Strand 4	A	33	43	anti-parallel
Strand 5	A	332	335	parallel
Strand 6	A	327	329	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	258	265	anti-parallel
Strand 3	A	270	277	anti-parallel
Strand 4	A	48	55	anti-parallel
Strand 5	C	431	433	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	302	305	anti-parallel
Strand 3	A	360	362	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	377	380	anti-parallel
Strand 3	A	405	407	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	414	417	anti-parallel
Strand 3	A	420	423	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	433	first strand
Strand 2	B	48	55	parallel
Strand 3	B	270	277	anti-parallel
Strand 4	B	258	265	anti-parallel
Strand 5	B	219	220	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	310	313	anti-parallel
Strand 3	B	281	293	anti-parallel
Strand 4	B	33	43	anti-parallel
Strand 5	B	332	335	parallel
Strand 6	B	327	329	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	302	305	anti-parallel
Strand 3	B	360	362	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	377	380	anti-parallel
Strand 3	B	405	407	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	414	417	anti-parallel
Strand 3	B	420	423	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	433	first strand
Strand 2	C	48	55	parallel
Strand 3	C	270	277	anti-parallel
Strand 4	C	258	265	anti-parallel
Strand 5	C	219	220	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	310	313	anti-parallel
Strand 3	C	281	293	anti-parallel
Strand 4	C	33	43	anti-parallel
Strand 5	C	332	335	parallel
Strand 6	C	327	329	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	302	305	anti-parallel
Strand 3	C	360	362	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	374	first strand
Strand 2	C	377	380	anti-parallel
Strand 3	C	405	407	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	389	first strand
Strand 2	C	414	417	anti-parallel
Strand 3	C	420	423	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	100	103	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	67	72	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	100	103	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	77	82	anti-parallel
Strand 3	F	67	72	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	48	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	48	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	97	98	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	100	103	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	77	82	anti-parallel
Strand 3	I	67	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NZ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ0