Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NZ2 entry

There are 9 chains in PDB entry 9NZ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 23	ALA 465
B	LEU 23	ALA 465
C	LEU 23	ALA 465
D	GLN 3	SER 115
E	ASP 1	ILE 105
F	GLN 3	SER 115
G	ASP 1	ILE 105
H	ASP 1	ILE 105
I	GLN 3	SER 115

There are 69 helices in PDB entry 9NZ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	32	Right-handed alpha
Helix 2	AA2	A	60	66	Right-handed 310
Helix 3	AA3	A	67	100	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed alpha
Helix 5	AA5	A	119	142	Right-handed alpha
Helix 6	AA6	A	142	148	Right-handed alpha
Helix 7	AA7	A	168	178	Right-handed alpha
Helix 8	AA8	A	179	185	Right-handed 310
Helix 9	AA9	A	186	209	Right-handed alpha
Helix 10	AB1	A	209	214	Right-handed alpha
Helix 11	AB2	A	223	228	Right-handed alpha
Helix 12	AB3	A	229	231	Right-handed 310
Helix 13	AB4	A	234	242	Right-handed alpha
Helix 14	AB5	A	245	247	Right-handed 310
Helix 15	AB6	A	248	253	Right-handed alpha
Helix 16	AB7	A	344	352	Right-handed alpha
Helix 17	AB8	A	354	358	Right-handed 310
Helix 18	AB9	A	382	385	Right-handed 310
Helix 19	AC1	A	447	454	Right-handed alpha
Helix 20	AC2	A	455	462	Right-handed alpha
Helix 21	AC3	B	25	32	Right-handed alpha
Helix 22	AC4	B	60	66	Right-handed 310
Helix 23	AC5	B	67	100	Right-handed alpha
Helix 24	AC6	B	112	116	Right-handed alpha
Helix 25	AC7	B	119	142	Right-handed alpha
Helix 26	AC8	B	142	148	Right-handed alpha
Helix 27	AC9	B	168	178	Right-handed alpha
Helix 28	AD1	B	179	185	Right-handed 310
Helix 29	AD2	B	186	209	Right-handed alpha
Helix 30	AD3	B	209	214	Right-handed alpha
Helix 31	AD4	B	223	228	Right-handed alpha
Helix 32	AD5	B	229	231	Right-handed 310
Helix 33	AD6	B	234	242	Right-handed alpha
Helix 34	AD7	B	245	247	Right-handed 310
Helix 35	AD8	B	248	253	Right-handed alpha
Helix 36	AD9	B	344	352	Right-handed alpha
Helix 37	AE1	B	354	358	Right-handed 310
Helix 38	AE2	B	382	385	Right-handed 310
Helix 39	AE3	B	447	454	Right-handed alpha
Helix 40	AE4	B	455	462	Right-handed alpha
Helix 41	AE5	C	25	32	Right-handed alpha
Helix 42	AE6	C	60	66	Right-handed 310
Helix 43	AE7	C	67	100	Right-handed alpha
Helix 44	AE8	C	112	116	Right-handed alpha
Helix 45	AE9	C	119	142	Right-handed alpha
Helix 46	AF1	C	142	148	Right-handed alpha
Helix 47	AF2	C	168	178	Right-handed alpha
Helix 48	AF3	C	179	185	Right-handed 310
Helix 49	AF4	C	186	209	Right-handed alpha
Helix 50	AF5	C	209	214	Right-handed alpha
Helix 51	AF6	C	223	228	Right-handed alpha
Helix 52	AF7	C	229	231	Right-handed 310
Helix 53	AF8	C	234	242	Right-handed alpha
Helix 54	AF9	C	245	247	Right-handed 310
Helix 55	AG1	C	248	253	Right-handed alpha
Helix 56	AG2	C	344	352	Right-handed alpha
Helix 57	AG3	C	354	358	Right-handed 310
Helix 58	AG4	C	382	385	Right-handed 310
Helix 59	AG5	C	447	454	Right-handed alpha
Helix 60	AG6	C	455	462	Right-handed alpha
Helix 61	AG7	D	61	64	Right-handed 310
Helix 62	AG8	D	83	87	Right-handed 310
Helix 63	AG9	E	79	83	Right-handed 310
Helix 64	AH1	F	61	64	Right-handed 310
Helix 65	AH2	F	83	87	Right-handed 310
Helix 66	AH3	G	79	83	Right-handed 310
Helix 67	AH4	H	79	83	Right-handed 310
Helix 68	AH5	I	61	64	Right-handed 310
Helix 69	AH6	I	83	87	Right-handed 310

There are 33 sheets in PDB entry 9NZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	33	45	anti-parallel
Strand 3	A	332	334	parallel
Strand 4	A	327	328	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	33	45	anti-parallel
Strand 3	A	287	293	anti-parallel
Strand 4	A	310	313	anti-parallel
Strand 5	A	318	321	anti-parallel
Strand 6	A	340	341	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	157	first strand
Strand 2	A	163	167	anti-parallel
Strand 3	A	49	55	parallel
Strand 4	A	270	276	anti-parallel
Strand 5	A	258	265	anti-parallel
Strand 6	A	221	222	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	B	420	423	parallel
Strand 3	B	414	417	anti-parallel
Strand 4	B	387	389	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	301	305	anti-parallel
Strand 3	A	360	362	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	377	380	anti-parallel
Strand 3	A	405	406	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	414	417	anti-parallel
Strand 3	A	420	423	anti-parallel
Strand 4	C	110	111	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	33	45	anti-parallel
Strand 3	B	332	334	parallel
Strand 4	B	327	328	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	33	45	anti-parallel
Strand 3	B	287	293	anti-parallel
Strand 4	B	310	313	anti-parallel
Strand 5	B	318	321	anti-parallel
Strand 6	B	340	341	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	157	first strand
Strand 2	B	163	167	anti-parallel
Strand 3	B	49	55	parallel
Strand 4	B	270	276	anti-parallel
Strand 5	B	258	265	anti-parallel
Strand 6	B	221	222	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	C	420	423	parallel
Strand 3	C	414	417	anti-parallel
Strand 4	C	387	389	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	301	305	anti-parallel
Strand 3	B	360	362	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	377	380	anti-parallel
Strand 3	B	405	406	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	282	first strand
Strand 2	C	33	45	anti-parallel
Strand 3	C	332	334	parallel
Strand 4	C	327	328	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	282	first strand
Strand 2	C	33	45	anti-parallel
Strand 3	C	287	293	anti-parallel
Strand 4	C	310	313	anti-parallel
Strand 5	C	318	321	anti-parallel
Strand 6	C	340	341	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	157	first strand
Strand 2	C	163	167	anti-parallel
Strand 3	C	49	55	parallel
Strand 4	C	270	276	anti-parallel
Strand 5	C	258	265	anti-parallel
Strand 6	C	221	222	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	301	305	anti-parallel
Strand 3	C	360	362	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	374	first strand
Strand 2	C	377	380	anti-parallel
Strand 3	C	405	406	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	101	104	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	35	38	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	101	104	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	96	97	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	17	24	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	101	104	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	35	38	anti-parallel
Strand 5	G	45	48	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	101	104	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	96	97	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	101	104	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	35	38	anti-parallel
Strand 5	H	45	48	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	101	104	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	96	97	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	17	24	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NZ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ2