Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NZ5 entry

There are 6 chains in PDB entry 9NZ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 10	TYR 203
D	ILE 12	TYR 203
C	ASP 1	CYS 218
B	GLU 1	ARG 213
E	ASP 1	CYS 218
F	GLU 1	ARG 213

There are 15 helices in PDB entry 9NZ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	35	Right-handed alpha
Helix 2	AA2	A	46	70	Right-handed alpha
Helix 3	AA3	A	73	105	Right-handed alpha
Helix 4	AA4	A	107	112	Right-handed 310
Helix 5	AA5	D	13	36	Right-handed alpha
Helix 6	AA6	D	46	70	Right-handed alpha
Helix 7	AA7	D	73	100	Right-handed alpha
Helix 8	AA8	D	107	112	Right-handed 310
Helix 9	AA9	C	125	132	Right-handed alpha
Helix 10	AB1	C	186	193	Right-handed alpha
Helix 11	AB2	B	87	91	Right-handed 310
Helix 12	AB3	B	156	158	Right-handed 310
Helix 13	AB4	E	125	132	Right-handed alpha
Helix 14	AB5	E	187	193	Right-handed alpha
Helix 15	AB6	F	87	91	Right-handed 310

There are 24 sheets in PDB entry 9NZ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	131	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	166	170	anti-parallel
Strand 4	A	175	186	anti-parallel
Strand 5	A	190	201	anti-parallel
Strand 6	A	138	143	anti-parallel
Strand 7	A	148	150	anti-parallel
Strand 8	A	153	154	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	119	123	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	174	185	anti-parallel
Strand 5	D	191	202	anti-parallel
Strand 6	D	138	143	anti-parallel
Strand 7	D	148	150	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	66	71	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	106	110	parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	38	42	anti-parallel
Strand 5	C	49	52	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	177	185	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	148	154	anti-parallel
Strand 3	C	195	202	anti-parallel
Strand 4	C	209	210	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	148	154	anti-parallel
Strand 3	C	195	202	anti-parallel
Strand 4	C	213	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	93	97	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	136	145	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	169	171	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	195	198	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	107	110	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	23	first strand
Strand 2	E	75	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	34	35	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	39	42	anti-parallel
Strand 3	E	89	92	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	140	141	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	136	first strand
Strand 2	E	180	186	anti-parallel
Strand 3	E	163	166	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	154	first strand
Strand 2	E	195	201	anti-parallel
Strand 3	E	209	214	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	69	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	72	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	92	97	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	122	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	163	165	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	122	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	169	171	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	194	196	anti-parallel
Strand 3	F	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NZ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ5