Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NZ6 entry

There are 8 chains in PDB entry 9NZ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 15	VAL 347
B	SER 19	GLY 352
C	GLY 18	ARG 347
D	SER 19	VAL 350
E	GLY 18	ASP 346
F	SER 19	VAL 350
G	GLY 18	ASP 346
H	GLY 18	VAL 350

There are105 helices in PDB entry 9NZ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	57	71	Right-handed alpha
Helix 3	AA3	A	87	100	Right-handed alpha
Helix 4	AA4	A	129	145	Right-handed alpha
Helix 5	AA5	A	162	176	Right-handed alpha
Helix 6	AA6	A	188	202	Right-handed alpha
Helix 7	AA7	A	223	232	Right-handed alpha
Helix 8	AA8	A	275	292	Right-handed alpha
Helix 9	AA9	A	294	304	Right-handed alpha
Helix 10	AB1	A	318	327	Right-handed alpha
Helix 11	AB2	A	328	331	Right-handed 310
Helix 12	AB3	A	335	344	Right-handed alpha
Helix 13	AB4	B	25	31	Right-handed 310
Helix 14	AB5	B	60	74	Right-handed alpha
Helix 15	AB6	B	90	103	Right-handed alpha
Helix 16	AB7	B	107	111	Right-handed 310
Helix 17	AB8	B	132	148	Right-handed alpha
Helix 18	AB9	B	165	179	Right-handed alpha
Helix 19	AC1	B	191	205	Right-handed alpha
Helix 20	AC2	B	221	225	Right-handed 310
Helix 21	AC3	B	226	235	Right-handed alpha
Helix 22	AC4	B	278	294	Right-handed alpha
Helix 23	AC5	B	297	307	Right-handed alpha
Helix 24	AC6	B	321	330	Right-handed alpha
Helix 25	AC7	B	331	333	Right-handed 310
Helix 26	AC8	B	338	347	Right-handed alpha
Helix 27	AC9	C	27	31	Right-handed 310
Helix 28	AD1	C	60	74	Right-handed alpha
Helix 29	AD2	C	90	103	Right-handed alpha
Helix 30	AD3	C	107	111	Right-handed 310
Helix 31	AD4	C	132	148	Right-handed alpha
Helix 32	AD5	C	165	179	Right-handed alpha
Helix 33	AD6	C	191	203	Right-handed alpha
Helix 34	AD7	C	221	225	Right-handed 310
Helix 35	AD8	C	226	235	Right-handed alpha
Helix 36	AD9	C	277	293	Right-handed alpha
Helix 37	AE1	C	297	307	Right-handed alpha
Helix 38	AE2	C	321	330	Right-handed alpha
Helix 39	AE3	C	338	346	Right-handed alpha
Helix 40	AE4	D	27	31	Right-handed 310
Helix 41	AE5	D	60	74	Right-handed alpha
Helix 42	AE6	D	90	103	Right-handed alpha
Helix 43	AE7	D	107	111	Right-handed 310
Helix 44	AE8	D	132	148	Right-handed alpha
Helix 45	AE9	D	165	179	Right-handed alpha
Helix 46	AF1	D	191	205	Right-handed alpha
Helix 47	AF2	D	226	235	Right-handed alpha
Helix 48	AF3	D	244	248	Right-handed 310
Helix 49	AF4	D	279	294	Right-handed alpha
Helix 50	AF5	D	297	307	Right-handed alpha
Helix 51	AF6	D	321	330	Right-handed alpha
Helix 52	AF7	D	331	333	Right-handed 310
Helix 53	AF8	D	338	347	Right-handed alpha
Helix 54	AF9	E	27	31	Right-handed 310
Helix 55	AG1	E	60	74	Right-handed alpha
Helix 56	AG2	E	90	103	Right-handed alpha
Helix 57	AG3	E	107	111	Right-handed 310
Helix 58	AG4	E	132	148	Right-handed alpha
Helix 59	AG5	E	165	179	Right-handed alpha
Helix 60	AG6	E	192	203	Right-handed alpha
Helix 61	AG7	E	226	235	Right-handed alpha
Helix 62	AG8	E	284	294	Right-handed alpha
Helix 63	AG9	E	297	307	Right-handed alpha
Helix 64	AH1	E	321	329	Right-handed alpha
Helix 65	AH2	E	330	332	Right-handed 310
Helix 66	AH3	E	338	346	Right-handed alpha
Helix 67	AH4	F	25	31	Right-handed 310
Helix 68	AH5	F	60	74	Right-handed alpha
Helix 69	AH6	F	90	103	Right-handed alpha
Helix 70	AH7	F	104	111	Right-handed 310
Helix 71	AH8	F	132	148	Right-handed alpha
Helix 72	AH9	F	165	179	Right-handed alpha
Helix 73	AI1	F	191	205	Right-handed alpha
Helix 74	AI2	F	227	235	Right-handed alpha
Helix 75	AI3	F	284	293	Right-handed alpha
Helix 76	AI4	F	297	307	Right-handed alpha
Helix 77	AI5	F	321	329	Right-handed alpha
Helix 78	AI6	F	339	349	Right-handed alpha
Helix 79	AI7	G	27	31	Right-handed 310
Helix 80	AI8	G	60	75	Right-handed alpha
Helix 81	AI9	G	90	103	Right-handed alpha
Helix 82	AJ1	G	107	111	Right-handed 310
Helix 83	AJ2	G	132	148	Right-handed alpha
Helix 84	AJ3	G	165	179	Right-handed alpha
Helix 85	AJ4	G	191	203	Right-handed alpha
Helix 86	AJ5	G	204	206	Right-handed 310
Helix 87	AJ6	G	226	235	Right-handed alpha
Helix 88	AJ7	G	244	248	Right-handed 310
Helix 89	AJ8	G	283	293	Right-handed alpha
Helix 90	AJ9	G	298	307	Right-handed alpha
Helix 91	AK1	G	321	330	Right-handed alpha
Helix 92	AK2	G	331	333	Right-handed 310
Helix 93	AK3	G	338	346	Right-handed alpha
Helix 94	AK4	H	27	31	Right-handed 310
Helix 95	AK5	H	60	74	Right-handed alpha
Helix 96	AK6	H	90	103	Right-handed alpha
Helix 97	AK7	H	132	148	Right-handed alpha
Helix 98	AK8	H	165	179	Right-handed alpha
Helix 99	AK9	H	191	205	Right-handed alpha
Helix 100	AL1	H	222	235	Right-handed alpha
Helix 101	AL2	H	284	293	Right-handed alpha
Helix 102	AL3	H	297	307	Right-handed alpha
Helix 103	AL4	H	321	330	Right-handed alpha
Helix 104	AL5	H	339	346	Right-handed alpha
Helix 105	AL6	H	347	349	Right-handed 310

There are 16 sheets in PDB entry 9NZ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	40	42	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	75	77	parallel
Strand 3	A	109	112	parallel
Strand 4	A	149	152	parallel
Strand 5	A	179	185	parallel
Strand 6	A	206	210	parallel
Strand 7	A	234	237	parallel
Strand 8	A	309	314	parallel
Strand 9	A	45	47	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	43	45	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	78	80	parallel
Strand 3	B	112	115	parallel
Strand 4	B	152	157	parallel
Strand 5	B	182	188	parallel
Strand 6	B	211	213	parallel
Strand 7	B	237	240	parallel
Strand 8	B	312	315	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	43	45	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	78	80	parallel
Strand 3	C	112	115	parallel
Strand 4	C	152	157	parallel
Strand 5	C	182	188	parallel
Strand 6	C	211	213	parallel
Strand 7	C	237	240	parallel
Strand 8	C	314	317	parallel
Strand 9	C	48	50	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	43	45	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	213	first strand
Strand 2	D	182	188	parallel
Strand 3	D	152	157	parallel
Strand 4	D	112	115	parallel
Strand 5	D	78	80	parallel
Strand 6	D	48	50	parallel
Strand 7	D	314	317	parallel
Strand 8	D	239	240	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	43	45	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	50	first strand
Strand 2	E	78	80	parallel
Strand 3	E	112	115	parallel
Strand 4	E	152	157	parallel
Strand 5	E	182	188	parallel
Strand 6	E	209	213	parallel
Strand 7	E	237	241	parallel
Strand 8	E	314	317	parallel
Strand 9	E	47	50	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	43	45	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	50	first strand
Strand 2	F	78	80	parallel
Strand 3	F	112	115	parallel
Strand 4	F	152	155	parallel
Strand 5	F	182	188	parallel
Strand 6	F	211	213	parallel
Strand 7	F	237	240	parallel
Strand 8	F	314	316	parallel
Strand 9	F	47	50	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	36	first strand
Strand 2	G	43	45	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	50	first strand
Strand 2	G	78	80	parallel
Strand 3	G	112	115	parallel
Strand 4	G	152	155	parallel
Strand 5	G	182	188	parallel
Strand 6	G	209	213	parallel
Strand 7	G	237	240	parallel
Strand 8	G	312	317	parallel
Strand 9	G	48	50	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	36	first strand
Strand 2	H	43	45	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	50	first strand
Strand 2	H	78	80	parallel
Strand 3	H	112	115	parallel
Strand 4	H	152	156	parallel
Strand 5	H	182	188	parallel
Strand 6	H	209	213	parallel
Strand 7	H	237	241	parallel
Strand 8	H	312	317	parallel
Strand 9	H	47	50	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NZ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZ6