Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NZB entry

There are 5 chains in PDB entry 9NZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 275
B
 MET 1GLU 273
C
 MET 1GLY 274
D
 MET 1GLY 274
E
 ARG 3ARG 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 89 helices in PDB entry 9NZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
40 42Right-handed 310
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
119 125Right-handed alpha
Helix 7
AA7
A
125 132Right-handed alpha
Helix 8
AA8
A
141 149Right-handed alpha
Helix 9
AA9
A
155 177Right-handed alpha
Helix 10
AB1
A
191 205Right-handed alpha
Helix 11
AB2
A
214 216Right-handed 310
Helix 12
AB3
A
217 226Right-handed alpha
Helix 13
AB4
A
228 241Right-handed alpha
Helix 14
AB5
A
257 271Right-handed alpha
Helix 15
AB6
B
16 18Right-handed 310
Helix 16
AB7
B
19 26Right-handed alpha
Helix 17
AB8
B
40 42Right-handed 310
Helix 18
AB9
B
43 58Right-handed alpha
Helix 19
AC1
B
74 85Right-handed alpha
Helix 20
AC2
B
98 110Right-handed alpha
Helix 21
AC3
B
119 125Right-handed alpha
Helix 22
AC4
B
125 131Right-handed alpha
Helix 23
AC5
B
141 149Right-handed alpha
Helix 24
AC6
B
155 177Right-handed alpha
Helix 25
AC7
B
191 205Right-handed alpha
Helix 26
AC8
B
214 216Right-handed 310
Helix 27
AC9
B
217 226Right-handed alpha
Helix 28
AD1
B
228 240Right-handed alpha
Helix 29
AD2
B
258 271Right-handed alpha
Helix 30
AD3
C
16 18Right-handed 310
Helix 31
AD4
C
19 25Right-handed alpha
Helix 32
AD5
C
40 42Right-handed 310
Helix 33
AD6
C
43 58Right-handed alpha
Helix 34
AD7
C
74 85Right-handed alpha
Helix 35
AD8
C
98 110Right-handed alpha
Helix 36
AD9
C
119 125Right-handed alpha
Helix 37
AE1
C
125 131Right-handed alpha
Helix 38
AE2
C
141 149Right-handed alpha
Helix 39
AE3
C
155 177Right-handed alpha
Helix 40
AE4
C
191 205Right-handed alpha
Helix 41
AE5
C
214 216Right-handed 310
Helix 42
AE6
C
217 226Right-handed alpha
Helix 43
AE7
C
228 242Right-handed alpha
Helix 44
AE8
C
257 271Right-handed alpha
Helix 45
AE9
D
16 18Right-handed 310
Helix 46
AF1
D
19 25Right-handed alpha
Helix 47
AF2
D
40 42Right-handed 310
Helix 48
AF3
D
43 58Right-handed alpha
Helix 49
AF4
D
74 85Right-handed alpha
Helix 50
AF5
D
98 110Right-handed alpha
Helix 51
AF6
D
119 125Right-handed alpha
Helix 52
AF7
D
125 131Right-handed alpha
Helix 53
AF8
D
141 149Right-handed alpha
Helix 54
AF9
D
155 177Right-handed alpha
Helix 55
AG1
D
191 205Right-handed alpha
Helix 56
AG2
D
214 216Right-handed 310
Helix 57
AG3
D
217 226Right-handed alpha
Helix 58
AG4
D
228 241Right-handed alpha
Helix 59
AG5
D
257 271Right-handed alpha
Helix 60
AG6
E
16 18Right-handed 310
Helix 61
AG7
E
19 25Right-handed alpha
Helix 62
AG8
E
40 42Right-handed 310
Helix 63
AG9
E
43 58Right-handed alpha
Helix 64
AH1
E
74 85Right-handed alpha
Helix 65
AH2
E
98 110Right-handed alpha
Helix 66
AH3
E
119 125Right-handed alpha
Helix 67
AH4
E
125 131Right-handed alpha
Helix 68
AH5
E
141 149Right-handed alpha
Helix 69
AH6
E
155 177Right-handed alpha
Helix 70
AH7
E
191 205Right-handed alpha
Helix 71
AH8
E
214 216Right-handed 310
Helix 72
AH9
E
217 226Right-handed alpha
Helix 73
AI1
E
230 241Right-handed alpha
Helix 74
AI2
E
261 272Right-handed alpha
Helix 75
AI3
F
16 18Right-handed 310
Helix 76
AI4
F
19 26Right-handed alpha
Helix 77
AI5
F
40 42Right-handed 310
Helix 78
AI6
F
43 58Right-handed alpha
Helix 79
AI7
F
74 85Right-handed alpha
Helix 80
AI8
F
98 110Right-handed alpha
Helix 81
AI9
F
119 125Right-handed alpha
Helix 82
AJ1
F
125 131Right-handed alpha
Helix 83
AJ2
F
141 149Right-handed alpha
Helix 84
AJ3
F
155 177Right-handed alpha
Helix 85
AJ4
F
191 205Right-handed alpha
Helix 86
AJ5
F
214 216Right-handed 310
Helix 87
AJ6
F
217 226Right-handed alpha
Helix 88
AJ7
F
228 242Right-handed alpha
Helix 89
AJ8
F
258 271Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9NZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
113 117parallel
Strand 3
A
88 93parallel
Strand 4
A
63 66parallel
Strand 5
A
30 34parallel
Strand 6
A
8 13parallel
Strand 7
A
209 212parallel
Strand 8
A
182 183parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
30 34parallel
Strand 3
B
63 66parallel
Strand 4
B
88 93parallel
Strand 5
B
113 117parallel
Strand 6
B
139 140parallel
Strand 7
B
182 183parallel
Strand 8
B
209 212parallel
Strand 9
B
8 13parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 13first strand
Strand 2
C
30 34parallel
Strand 3
C
63 66parallel
Strand 4
C
88 93parallel
Strand 5
C
113 117parallel
Strand 6
C
139 140parallel
Strand 7
C
182 183parallel
Strand 8
C
209 212parallel
Strand 9
C
8 13parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 13first strand
Strand 2
D
30 34parallel
Strand 3
D
63 66parallel
Strand 4
D
88 93parallel
Strand 5
D
113 117parallel
Strand 6
D
139 140parallel
Strand 7
D
182 183parallel
Strand 8
D
209 212parallel
Strand 9
D
8 13parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 13first strand
Strand 2
E
30 34parallel
Strand 3
E
63 66parallel
Strand 4
E
88 93parallel
Strand 5
E
113 117parallel
Strand 6
E
139 140parallel
Strand 7
E
182 183parallel
Strand 8
E
209 212parallel
Strand 9
E
8 13parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 13first strand
Strand 2
F
30 34parallel
Strand 3
F
63 66parallel
Strand 4
F
88 93parallel
Strand 5
F
113 117parallel
Strand 6
F
139 140parallel
Strand 7
F
182 183parallel
Strand 8
F
209 212parallel
Strand 9
F
8 13parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il