Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NZJ entry

There are 4 chains in PDB entry 9NZJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 38	SER 363
B	LEU 39	SER 363
M	UNK 1	UNK 5
C	UNK 1	UNK 4

There are 15 helices in PDB entry 9NZJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	50	Right-handed alpha
Helix 2	AA2	A	107	112	Right-handed alpha
Helix 3	AA3	A	158	162	Right-handed 310
Helix 4	AA4	A	173	177	Right-handed 310
Helix 5	AA5	A	248	262	Right-handed alpha
Helix 6	AA6	A	277	285	Right-handed alpha
Helix 7	AA7	A	301	306	Right-handed alpha
Helix 8	AA8	A	324	334	Right-handed alpha
Helix 9	AA9	B	42	50	Right-handed alpha
Helix 10	AB1	B	158	162	Right-handed 310
Helix 11	AB2	B	173	177	Right-handed 310
Helix 12	AB3	B	248	262	Right-handed alpha
Helix 13	AB4	B	277	285	Right-handed alpha
Helix 14	AB5	B	301	306	Right-handed alpha
Helix 15	AB6	B	324	334	Right-handed alpha

There are 10 sheets in PDB entry 9NZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	61	first strand
Strand 2	A	89	98	anti-parallel
Strand 3	A	103	106	anti-parallel
Strand 4	A	140	145	anti-parallel
Strand 5	A	126	135	anti-parallel
Strand 6	A	114	120	anti-parallel
Strand 7	A	53	61	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	A	225	232	anti-parallel
Strand 3	A	243	247	anti-parallel
Strand 4	A	202	205	anti-parallel
Strand 5	A	180	191	anti-parallel
Strand 6	A	167	172	anti-parallel
Strand 7	A	217	219	anti-parallel
Strand 8	A	225	232	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	359	360	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	320	321	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	340	347	anti-parallel
Strand 5	A	350	357	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	59	first strand
Strand 2	B	91	98	anti-parallel
Strand 3	B	103	106	anti-parallel
Strand 4	B	140	145	anti-parallel
Strand 5	B	126	135	anti-parallel
Strand 6	B	116	120	anti-parallel
Strand 7	B	53	59	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	2	4	first strand
Strand 2	B	225	233	anti-parallel
Strand 3	B	243	247	anti-parallel
Strand 4	B	202	205	anti-parallel
Strand 5	B	180	191	anti-parallel
Strand 6	B	167	172	anti-parallel
Strand 7	B	217	219	anti-parallel
Strand 8	B	225	233	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	359	360	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	313	317	anti-parallel
Strand 4	B	320	321	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	313	317	anti-parallel
Strand 4	B	340	347	anti-parallel
Strand 5	B	350	357	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NZJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZJ