Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NZO entry

There are 5 chains in PDB entry 9NZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 8PRO 256
D
 T 1 C 33
E
 G 1 A 17
C
 G 15 A 154
A
 THR 6LEU 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9NZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
24 68Right-handed alpha
Helix 2
AA2
B
68 80Right-handed alpha
Helix 3
AA3
B
87 113Right-handed alpha
Helix 4
AA4
B
128 137Right-handed alpha
Helix 5
AA5
B
141 166Right-handed alpha
Helix 6
AA6
B
219 229Right-handed alpha
Helix 7
AA7
A
22 41Right-handed alpha
Helix 8
AA8
A
42 68Right-handed alpha
Helix 9
AA9
A
68 80Right-handed alpha
Helix 10
AB1
A
80 85Right-handed alpha
Helix 11
AB2
A
87 115Right-handed alpha
Helix 12
AB3
A
125 137Right-handed alpha
Helix 13
AB4
A
141 158Right-handed alpha
Helix 14
AB5
A
159 165Right-handed alpha
Helix 15
AB6
A
204 206Right-handed 310
Helix 16
AB7
A
219 229Right-handed alpha
Helix 17
AB8
A
299 308Right-handed alpha
Helix 18
AB9
A
309 316Right-handed alpha
Helix 19
AC1
A
332 362Right-handed alpha
Helix 20
AC2
A
395 411Right-handed alpha
Helix 21
AC3
A
450 455Right-handed alpha
Helix 22
AC4
A
467 478Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9NZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
238 241anti-parallel
Strand 3
B
247 254anti-parallel
Strand 4
B
9 16anti-parallel
Strand 5
B
207 211anti-parallel
Strand 6
B
199 203anti-parallel
Strand 7
B
191 193anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
238 241anti-parallel
Strand 3
B
247 254anti-parallel
Strand 4
B
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
247 254anti-parallel
Strand 4
A
7 16anti-parallel
Strand 5
A
208 212anti-parallel
Strand 6
A
199 202anti-parallel
Strand 7
A
191 193anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
247 254anti-parallel
Strand 4
A
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
188 189anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
263 271anti-parallel
Strand 3
A
364 370parallel
Strand 4
A
413 417parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
442 443anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il