Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NZP entry

There are 5 chains in PDB entry 9NZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 195
B
 MET 1THR 194
C
 C 9 T 38
D
 A 0 A 9
E
 C 2 G 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9NZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 47Right-handed alpha
Helix 2
AA2
A
49 60Right-handed alpha
Helix 3
AA3
A
77 96Right-handed alpha
Helix 4
AA4
A
117 121Right-handed 310
Helix 5
AA5
A
152 167Right-handed alpha
Helix 6
AA6
B
15 46Right-handed alpha
Helix 7
AA7
B
49 60Right-handed alpha
Helix 8
AA8
B
78 96Right-handed alpha
Helix 9
AA9
B
117 121Right-handed 310
Helix 10
AB1
B
147 152Right-handed alpha
Helix 11
AB2
B
155 163Right-handed alpha
Helix 12
AB3
B
164 166Right-handed 310
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There are 4 sheets in PDB entry 9NZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
185 192anti-parallel
Strand 4
A
2 11anti-parallel
Strand 5
A
143 145anti-parallel
Strand 6
A
134 135anti-parallel
Strand 7
A
123 124anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
185 192anti-parallel
Strand 4
A
171 172anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
175 178anti-parallel
Strand 3
B
186 192anti-parallel
Strand 4
B
3 11anti-parallel
Strand 5
B
142 145anti-parallel
Strand 6
B
134 136anti-parallel
Strand 7
B
122 123anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
175 178anti-parallel
Strand 3
B
186 192anti-parallel
Strand 4
B
171 172anti-parallel
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