Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NZQ entry

There are 5 chains in PDB entry 9NZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLY 427
B
 GLU 13GLY 427
C
 A 27 C 42
D
 G 7 C 14
E
 G 2 G 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9NZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 62Right-handed alpha
Helix 2
AA2
A
67 72Right-handed alpha
Helix 3
AA3
A
76 89Right-handed alpha
Helix 4
AA4
A
93 111Right-handed alpha
Helix 5
AA5
A
111 117Right-handed alpha
Helix 6
AA6
A
134 136Right-handed 310
Helix 7
AA7
A
156 162Right-handed alpha
Helix 8
AA8
A
178 188Right-handed alpha
Helix 9
AA9
A
250 271Right-handed alpha
Helix 10
AB1
A
287 319Right-handed alpha
Helix 11
AB2
A
347 362Right-handed alpha
Helix 12
AB3
A
384 388Right-handed 310
Helix 13
AB4
A
404 415Right-handed alpha
Helix 14
AB5
A
417 427Right-handed alpha
Helix 15
AB6
B
22 54Right-handed alpha
Helix 16
AB7
B
77 89Right-handed alpha
Helix 17
AB8
B
93 111Right-handed alpha
Helix 18
AB9
B
111 117Right-handed alpha
Helix 19
AC1
B
156 162Right-handed alpha
Helix 20
AC2
B
178 188Right-handed alpha
Helix 21
AC3
B
250 274Right-handed alpha
Helix 22
AC4
B
294 319Right-handed alpha
Helix 23
AC5
B
346 361Right-handed alpha
Helix 24
AC6
B
406 415Right-handed alpha
Helix 25
AC7
B
417 427Right-handed alpha
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There are 7 sheets in PDB entry 9NZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
205 209anti-parallel
Strand 3
A
196 199anti-parallel
Strand 4
A
131 133anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
169 173anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
246 248anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
195 196anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
149 152anti-parallel
Strand 3
B
170 172anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 230first strand
Strand 2
B
233 238anti-parallel
Strand 3
B
245 247anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
365 368parallel
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