Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NZR entry

There are 5 chains in PDB entry 9NZR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	T 1	C 33
E	G 1	A 23
A	THR 3	LEU 478
B	THR 6	LEU 478
C	G 16	A 154

There are 29 helices in PDB entry 9NZR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	41	Right-handed alpha
Helix 2	AA2	A	42	68	Right-handed alpha
Helix 3	AA3	A	68	80	Right-handed alpha
Helix 4	AA4	A	80	85	Right-handed alpha
Helix 5	AA5	A	87	114	Right-handed alpha
Helix 6	AA6	A	125	137	Right-handed alpha
Helix 7	AA7	A	141	158	Right-handed alpha
Helix 8	AA8	A	159	165	Right-handed alpha
Helix 9	AA9	A	219	229	Right-handed alpha
Helix 10	AB1	A	300	306	Right-handed alpha
Helix 11	AB2	A	308	314	Right-handed alpha
Helix 12	AB3	A	315	320	Right-handed alpha
Helix 13	AB4	A	325	330	Right-handed alpha
Helix 14	AB5	A	331	335	Right-handed 310
Helix 15	AB6	A	336	337	Right-handed 310
Helix 16	AB7	A	338	362	Right-handed alpha
Helix 17	AB8	A	395	411	Right-handed alpha
Helix 18	AB9	A	468	478	Right-handed alpha
Helix 19	AC1	B	24	68	Right-handed alpha
Helix 20	AC2	B	68	80	Right-handed alpha
Helix 21	AC3	B	87	114	Right-handed alpha
Helix 22	AC4	B	127	137	Right-handed alpha
Helix 23	AC5	B	141	166	Right-handed alpha
Helix 24	AC6	B	204	206	Right-handed 310
Helix 25	AC7	B	220	229	Right-handed alpha
Helix 26	AC8	B	294	318	Right-handed alpha
Helix 27	AC9	B	328	362	Right-handed alpha
Helix 28	AD1	B	395	410	Right-handed alpha
Helix 29	AD2	B	468	478	Right-handed alpha

There are 9 sheets in PDB entry 9NZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	237	241	anti-parallel
Strand 3	A	247	256	anti-parallel
Strand 4	A	5	16	anti-parallel
Strand 5	A	208	212	anti-parallel
Strand 6	A	199	202	anti-parallel
Strand 7	A	191	193	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	237	241	anti-parallel
Strand 3	A	247	256	anti-parallel
Strand 4	A	233	234	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	188	189	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	279	282	anti-parallel
Strand 3	A	263	271	anti-parallel
Strand 4	A	364	370	parallel
Strand 5	A	413	417	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	466	467	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	238	241	anti-parallel
Strand 3	B	247	254	anti-parallel
Strand 4	B	8	16	anti-parallel
Strand 5	B	207	211	anti-parallel
Strand 6	B	199	203	anti-parallel
Strand 7	B	191	193	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	238	241	anti-parallel
Strand 3	B	247	254	anti-parallel
Strand 4	B	233	234	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	278	282	anti-parallel
Strand 3	B	263	272	anti-parallel
Strand 4	B	364	369	parallel
Strand 5	B	413	415	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	466	467	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NZR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NZR