Analysis of interatomic Contacts of Structural Units in PDB entry:
9O04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O04 entry

There are 14 chains in PDB entry 9O04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 91	LYS 223
B	ASP 93	LYS 223
C	ARG 45	ARG 717
D	LYS 4	PHE 308
E	LYS 4	ARG 294
F	PRO 2	CYS 160
G	ARG 45	ARG 717
H	PRO 2	CYS 160
I	LYS 4	ARG 294
J	LYS 4	PHE 308
K	LYS 4	ARG 294
L	LYS 4	ARG 294
M	LYS 4	ARG 294
N	LYS 4	ARG 294

There are117 helices in PDB entry 9O04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	223	Right-handed alpha
Helix 2	AA2	B	94	223	Right-handed alpha
Helix 3	AA3	C	46	50	Right-handed 310
Helix 4	AA4	C	51	60	Right-handed alpha
Helix 5	AA5	C	66	72	Right-handed alpha
Helix 6	AA6	C	75	100	Right-handed alpha
Helix 7	AA7	C	331	335	Right-handed 310
Helix 8	AA8	C	338	342	Right-handed 310
Helix 9	AA9	D	5	18	Right-handed alpha
Helix 10	AB1	D	24	39	Right-handed alpha
Helix 11	AB2	D	61	73	Right-handed alpha
Helix 12	AB3	D	92	107	Right-handed alpha
Helix 13	AB4	D	120	125	Right-handed alpha
Helix 14	AB5	D	129	138	Right-handed alpha
Helix 15	AB6	D	140	151	Right-handed alpha
Helix 16	AB7	D	176	180	Right-handed 310
Helix 17	AB8	D	193	201	Right-handed alpha
Helix 18	AB9	D	221	233	Right-handed alpha
Helix 19	AC1	D	264	268	Right-handed 310
Helix 20	AC2	E	5	19	Right-handed alpha
Helix 21	AC3	E	24	42	Right-handed alpha
Helix 22	AC4	E	61	73	Right-handed alpha
Helix 23	AC5	E	92	107	Right-handed alpha
Helix 24	AC6	E	122	128	Right-handed alpha
Helix 25	AC7	E	128	138	Right-handed alpha
Helix 26	AC8	E	140	153	Right-handed alpha
Helix 27	AC9	E	176	183	Right-handed alpha
Helix 28	AD1	E	193	201	Right-handed alpha
Helix 29	AD2	E	221	232	Right-handed alpha
Helix 30	AD3	E	264	268	Right-handed 310
Helix 31	AD4	F	17	21	Right-handed 310
Helix 32	AD5	F	24	32	Right-handed alpha
Helix 33	AD6	F	51	65	Right-handed alpha
Helix 34	AD7	F	87	93	Right-handed alpha
Helix 35	AD8	F	98	110	Right-handed alpha
Helix 36	AD9	F	113	128	Right-handed alpha
Helix 37	AE1	F	131	139	Right-handed alpha
Helix 38	AE2	F	150	155	Right-handed alpha
Helix 39	AE3	G	51	60	Right-handed alpha
Helix 40	AE4	G	67	73	Right-handed alpha
Helix 41	AE5	G	76	100	Right-handed alpha
Helix 42	AE6	G	331	335	Right-handed 310
Helix 43	AE7	G	667	671	Right-handed 310
Helix 44	AE8	H	17	23	Right-handed alpha
Helix 45	AE9	H	24	34	Right-handed alpha
Helix 46	AF1	H	51	65	Right-handed alpha
Helix 47	AF2	H	88	92	Right-handed 310
Helix 48	AF3	H	96	111	Right-handed alpha
Helix 49	AF4	H	112	128	Right-handed alpha
Helix 50	AF5	H	131	140	Right-handed alpha
Helix 51	AF6	H	149	155	Right-handed alpha
Helix 52	AF7	I	5	19	Right-handed alpha
Helix 53	AF8	I	24	41	Right-handed alpha
Helix 54	AF9	I	61	73	Right-handed alpha
Helix 55	AG1	I	92	107	Right-handed alpha
Helix 56	AG2	I	120	128	Right-handed alpha
Helix 57	AG3	I	128	138	Right-handed alpha
Helix 58	AG4	I	140	152	Right-handed alpha
Helix 59	AG5	I	176	181	Right-handed alpha
Helix 60	AG6	I	193	198	Right-handed alpha
Helix 61	AG7	I	221	233	Right-handed alpha
Helix 62	AG8	I	264	268	Right-handed 310
Helix 63	AG9	J	5	19	Right-handed alpha
Helix 64	AH1	J	24	41	Right-handed alpha
Helix 65	AH2	J	61	73	Right-handed alpha
Helix 66	AH3	J	92	107	Right-handed alpha
Helix 67	AH4	J	120	128	Right-handed alpha
Helix 68	AH5	J	128	138	Right-handed alpha
Helix 69	AH6	J	141	151	Right-handed alpha
Helix 70	AH7	J	176	182	Right-handed alpha
Helix 71	AH8	J	193	201	Right-handed alpha
Helix 72	AH9	J	221	233	Right-handed alpha
Helix 73	AI1	J	264	268	Right-handed 310
Helix 74	AI2	K	5	19	Right-handed alpha
Helix 75	AI3	K	24	42	Right-handed alpha
Helix 76	AI4	K	61	73	Right-handed alpha
Helix 77	AI5	K	92	107	Right-handed alpha
Helix 78	AI6	K	122	128	Right-handed alpha
Helix 79	AI7	K	128	138	Right-handed alpha
Helix 80	AI8	K	141	151	Right-handed alpha
Helix 81	AI9	K	176	181	Right-handed alpha
Helix 82	AJ1	K	193	201	Right-handed alpha
Helix 83	AJ2	K	221	231	Right-handed alpha
Helix 84	AJ3	K	264	268	Right-handed 310
Helix 85	AJ4	L	5	19	Right-handed alpha
Helix 86	AJ5	L	24	42	Right-handed alpha
Helix 87	AJ6	L	61	73	Right-handed alpha
Helix 88	AJ7	L	92	107	Right-handed alpha
Helix 89	AJ8	L	120	128	Right-handed alpha
Helix 90	AJ9	L	128	138	Right-handed alpha
Helix 91	AK1	L	140	151	Right-handed alpha
Helix 92	AK2	L	176	182	Right-handed alpha
Helix 93	AK3	L	193	201	Right-handed alpha
Helix 94	AK4	L	221	233	Right-handed alpha
Helix 95	AK5	L	264	268	Right-handed 310
Helix 96	AK6	M	5	19	Right-handed alpha
Helix 97	AK7	M	24	41	Right-handed alpha
Helix 98	AK8	M	61	73	Right-handed alpha
Helix 99	AK9	M	92	107	Right-handed alpha
Helix 100	AL1	M	122	126	Right-handed 310
Helix 101	AL2	M	128	138	Right-handed alpha
Helix 102	AL3	M	140	151	Right-handed alpha
Helix 103	AL4	M	179	183	Right-handed 310
Helix 104	AL5	M	195	200	Right-handed alpha
Helix 105	AL6	M	221	233	Right-handed alpha
Helix 106	AL7	M	264	268	Right-handed 310
Helix 107	AL8	N	5	19	Right-handed alpha
Helix 108	AL9	N	24	41	Right-handed alpha
Helix 109	AM1	N	61	73	Right-handed alpha
Helix 110	AM2	N	93	107	Right-handed alpha
Helix 111	AM3	N	122	127	Right-handed alpha
Helix 112	AM4	N	128	138	Right-handed alpha
Helix 113	AM5	N	140	151	Right-handed alpha
Helix 114	AM6	N	176	182	Right-handed alpha
Helix 115	AM7	N	195	200	Right-handed alpha
Helix 116	AM8	N	221	233	Right-handed alpha
Helix 117	AM9	N	264	268	Right-handed 310

There are 44 sheets in PDB entry 9O04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	712	715	anti-parallel
Strand 3	C	688	691	anti-parallel
Strand 4	C	680	683	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	186	189	anti-parallel
Strand 3	C	210	214	anti-parallel
Strand 4	C	219	223	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	205	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	262	263	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	322	326	parallel
Strand 3	C	313	316	anti-parallel
Strand 4	C	295	299	anti-parallel
Strand 5	C	287	290	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	659	662	parallel
Strand 3	C	644	650	anti-parallel
Strand 4	C	351	356	anti-parallel
Strand 5	C	344	346	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	156	159	parallel
Strand 3	D	163	165	anti-parallel
Strand 4	D	236	239	parallel
Strand 5	D	256	258	parallel
Strand 6	D	250	251	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	113	first strand
Strand 2	D	80	82	parallel
Strand 3	D	52	55	parallel
Strand 4	D	273	278	anti-parallel
Strand 5	D	284	289	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	218	219	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	156	159	parallel
Strand 3	E	163	165	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	81	first strand
Strand 2	E	52	54	parallel
Strand 3	E	277	278	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	218	220	parallel
Strand 3	E	210	211	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	239	first strand
Strand 2	E	256	258	parallel
Strand 3	E	249	251	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	275	first strand
Strand 2	E	287	289	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	104	first strand
Strand 2	G	710	715	anti-parallel
Strand 3	G	688	691	anti-parallel
Strand 4	G	681	683	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	127	first strand
Strand 2	G	132	136	anti-parallel
Strand 3	G	151	155	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	168	first strand
Strand 2	G	219	223	parallel
Strand 3	G	210	214	anti-parallel
Strand 4	G	185	189	anti-parallel
Strand 5	G	178	182	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	192	193	first strand
Strand 2	G	205	206	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	240	first strand
Strand 2	G	243	247	anti-parallel
Strand 3	G	260	264	anti-parallel
Strand 4	G	269	270	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	287	292	first strand
Strand 2	G	295	299	anti-parallel
Strand 3	G	312	317	anti-parallel
Strand 4	G	322	326	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	328	330	first strand
Strand 2	G	659	661	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	344	347	first strand
Strand 2	G	350	355	anti-parallel
Strand 3	G	645	650	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	16	first strand
Strand 2	H	4	6	anti-parallel
Strand 3	H	44	45	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	48	first strand
Strand 2	I	156	159	parallel
Strand 3	I	163	165	anti-parallel
Strand 4	I	236	239	parallel
Strand 5	I	256	258	parallel
Strand 6	I	249	251	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	111	113	first strand
Strand 2	I	80	82	parallel
Strand 3	I	52	55	parallel
Strand 4	I	275	278	anti-parallel
Strand 5	I	284	287	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	202	203	first strand
Strand 2	I	218	220	parallel
Strand 3	I	210	211	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	48	first strand
Strand 2	J	156	159	parallel
Strand 3	J	163	165	anti-parallel
Strand 4	J	236	239	parallel
Strand 5	J	256	258	parallel
Strand 6	J	250	251	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	111	113	first strand
Strand 2	J	80	82	parallel
Strand 3	J	52	55	parallel
Strand 4	J	273	278	anti-parallel
Strand 5	J	287	289	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	202	203	first strand
Strand 2	J	218	220	parallel
Strand 3	J	210	211	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	46	48	first strand
Strand 2	K	157	159	parallel
Strand 3	K	163	165	anti-parallel
Strand 4	K	236	239	parallel
Strand 5	K	256	258	parallel
Strand 6	K	250	251	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	202	203	first strand
Strand 2	K	218	220	parallel
Strand 3	K	210	211	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	275	first strand
Strand 2	K	287	289	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	156	159	parallel
Strand 3	L	163	165	anti-parallel
Strand 4	L	236	239	parallel
Strand 5	L	256	258	parallel
Strand 6	L	249	251	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	55	first strand
Strand 2	L	80	82	parallel
Strand 3	L	111	113	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	202	203	first strand
Strand 2	L	218	220	parallel
Strand 3	L	210	211	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	273	277	first strand
Strand 2	L	285	289	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	48	first strand
Strand 2	M	156	159	parallel
Strand 3	M	163	166	anti-parallel
Strand 4	M	236	239	parallel
Strand 5	M	256	258	parallel
Strand 6	M	249	251	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	111	113	first strand
Strand 2	M	80	82	parallel
Strand 3	M	52	55	parallel
Strand 4	M	273	278	anti-parallel
Strand 5	M	284	289	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	202	203	first strand
Strand 2	M	218	220	parallel
Strand 3	M	210	211	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	48	first strand
Strand 2	N	156	159	parallel
Strand 3	N	163	166	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	81	82	first strand
Strand 2	N	52	55	parallel
Strand 3	N	273	278	anti-parallel
Strand 4	N	284	289	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	202	203	first strand
Strand 2	N	218	220	parallel
Strand 3	N	210	211	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	237	239	first strand
Strand 2	N	256	258	parallel
Strand 3	N	249	251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O04

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O04