Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O0B entry

There is 1 chain in PDB entry 9O0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 11LYS 641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 9O0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 20Right-handed 310
Helix 2
AA2
A
21 26Right-handed alpha
Helix 3
AA3
A
50 53Right-handed 310
Helix 4
AA4
A
135 141Right-handed alpha
Helix 5
AA5
A
146 154Right-handed alpha
Helix 6
AA6
A
169 175Right-handed alpha
Helix 7
AA7
A
178 186Right-handed alpha
Helix 8
AA8
A
187 189Right-handed 310
Helix 9
AA9
A
190 199Right-handed alpha
Helix 10
AB1
A
209 213Right-handed 310
Helix 11
AB2
A
272 280Right-handed alpha
Helix 12
AB3
A
282 293Right-handed alpha
Helix 13
AB4
A
293 299Right-handed alpha
Helix 14
AB5
A
311 314Right-handed 310
Helix 15
AB6
A
319 322Right-handed 310
Helix 16
AB7
A
352 354Right-handed 310
Helix 17
AB8
A
398 404Right-handed alpha
Helix 18
AB9
A
406 408Right-handed 310
Helix 19
AC1
A
409 419Right-handed alpha
Helix 20
AC2
A
433 439Right-handed alpha
Helix 21
AC3
A
441 450Right-handed alpha
Helix 22
AC4
A
450 459Right-handed alpha
Helix 23
AC5
A
541 550Right-handed alpha
Helix 24
AC6
A
552 561Right-handed alpha
Helix 25
AC7
A
562 567Right-handed 310
Helix 26
AC8
A
579 586Right-handed alpha
Helix 27
AC9
A
587 593Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9O0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
124 126parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 82first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
105 106anti-parallel
Strand 4
A
109 110anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
237 240anti-parallel
Strand 3
A
243 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
255 259anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
304 309anti-parallel
Strand 3
A
384 389parallel
Strand 4
A
373 381anti-parallel
Strand 5
A
367 369anti-parallel
Strand 6
A
356 361anti-parallel
Strand 7
A
336 340anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
427 431anti-parallel
Strand 3
A
526 531parallel
Strand 4
A
512 523anti-parallel
Strand 5
A
506 509anti-parallel
Strand 6
A
488 493anti-parallel
Strand 7
A
479 482anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 576first strand
Strand 2
A
631 634parallel
Strand 3
A
618 624anti-parallel
Strand 4
A
609 611anti-parallel
Strand 5
A
604 606anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il