Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O0D entry

There are 4 chains in PDB entry 9O0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 159	THR 383
B	GLU 158	CYS 382
C	GLU 158	THR 383
D	GLU 158	THR 383

There are 28 helices in PDB entry 9O0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	207	230	Right-handed alpha
Helix 2	AA2	A	257	272	Right-handed alpha
Helix 3	AA3	A	273	275	Right-handed 310
Helix 4	AA4	A	276	284	Right-handed alpha
Helix 5	AA5	A	312	317	Right-handed alpha
Helix 6	AA6	A	357	367	Right-handed alpha
Helix 7	AA7	A	367	379	Right-handed alpha
Helix 8	AA8	B	207	229	Right-handed alpha
Helix 9	AA9	B	257	272	Right-handed alpha
Helix 10	AB1	B	273	275	Right-handed 310
Helix 11	AB2	B	276	284	Right-handed alpha
Helix 12	AB3	B	312	317	Right-handed alpha
Helix 13	AB4	B	360	367	Right-handed alpha
Helix 14	AB5	B	367	379	Right-handed alpha
Helix 15	AB6	C	209	229	Right-handed alpha
Helix 16	AB7	C	257	272	Right-handed alpha
Helix 17	AB8	C	273	275	Right-handed 310
Helix 18	AB9	C	276	282	Right-handed alpha
Helix 19	AC1	C	312	317	Right-handed alpha
Helix 20	AC2	C	359	367	Right-handed alpha
Helix 21	AC3	C	367	380	Right-handed alpha
Helix 22	AC4	D	207	229	Right-handed alpha
Helix 23	AC5	D	257	272	Right-handed alpha
Helix 24	AC6	D	273	275	Right-handed 310
Helix 25	AC7	D	276	284	Right-handed alpha
Helix 26	AC8	D	312	317	Right-handed alpha
Helix 27	AC9	D	357	367	Right-handed alpha
Helix 28	AD1	D	367	379	Right-handed alpha

There are 20 sheets in PDB entry 9O0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	180	182	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	288	293	parallel
Strand 3	A	302	309	anti-parallel
Strand 4	A	233	237	anti-parallel
Strand 5	A	194	198	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	288	293	parallel
Strand 3	A	302	309	anti-parallel
Strand 4	A	250	251	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	336	337	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	351	353	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	180	182	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	288	293	parallel
Strand 3	B	302	309	anti-parallel
Strand 4	B	233	237	anti-parallel
Strand 5	B	194	198	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	288	293	parallel
Strand 3	B	302	309	anti-parallel
Strand 4	B	250	251	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	336	337	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	351	353	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	180	182	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	288	293	parallel
Strand 3	C	302	309	anti-parallel
Strand 4	C	233	237	anti-parallel
Strand 5	C	194	198	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	288	293	parallel
Strand 3	C	302	309	anti-parallel
Strand 4	C	250	251	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	334	337	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	346	first strand
Strand 2	C	351	353	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	180	182	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	288	293	parallel
Strand 3	D	302	309	anti-parallel
Strand 4	D	233	237	anti-parallel
Strand 5	D	194	198	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	288	293	parallel
Strand 3	D	302	309	anti-parallel
Strand 4	D	250	251	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	328	first strand
Strand 2	D	335	337	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	351	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0D