Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O0I entry

There are 3 chains in PDB entry 9O0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	MET 1	ILE 195
H	MET 1	GLU 315
J	MET 1	GLU 315

There are 30 helices in PDB entry 9O0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	3	16	Right-handed alpha
Helix 2	AA2	G	16	27	Right-handed alpha
Helix 3	AA3	G	42	50	Right-handed alpha
Helix 4	AA4	G	51	72	Right-handed alpha
Helix 5	AA5	G	95	102	Right-handed alpha
Helix 6	AA6	G	102	107	Right-handed alpha
Helix 7	AA7	G	112	132	Right-handed alpha
Helix 8	AA8	G	139	145	Right-handed alpha
Helix 9	AA9	H	2	16	Right-handed alpha
Helix 10	AB1	H	37	56	Right-handed alpha
Helix 11	AB2	H	66	70	Right-handed 310
Helix 12	AB3	H	86	97	Right-handed alpha
Helix 13	AB4	H	107	111	Right-handed 310
Helix 14	AB5	H	186	192	Right-handed alpha
Helix 15	AB6	H	195	214	Right-handed alpha
Helix 16	AB7	H	218	226	Right-handed alpha
Helix 17	AB8	H	228	242	Right-handed alpha
Helix 18	AB9	H	249	259	Right-handed alpha
Helix 19	AC1	H	280	292	Right-handed alpha
Helix 20	AC2	J	2	16	Right-handed alpha
Helix 21	AC3	J	37	57	Right-handed alpha
Helix 22	AC4	J	86	96	Right-handed alpha
Helix 23	AC5	J	136	139	Right-handed 310
Helix 24	AC6	J	185	192	Right-handed alpha
Helix 25	AC7	J	195	212	Right-handed alpha
Helix 26	AC8	J	218	226	Right-handed alpha
Helix 27	AC9	J	228	241	Right-handed alpha
Helix 28	AD1	J	249	260	Right-handed alpha
Helix 29	AD2	J	262	267	Right-handed alpha
Helix 30	AD3	J	280	292	Right-handed alpha

There are 5 sheets in PDB entry 9O0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	180	first strand
Strand 2	G	81	88	anti-parallel
Strand 3	G	148	155	anti-parallel
Strand 4	G	165	169	anti-parallel
Strand 5	G	188	191	parallel
Strand 6	G	182	183	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	33	first strand
Strand 2	H	22	26	anti-parallel
Strand 3	H	115	124	anti-parallel
Strand 4	H	127	134	anti-parallel
Strand 5	H	174	177	anti-parallel
Strand 6	H	180	183	anti-parallel
Strand 7	H	78	79	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	268	269	first strand
Strand 2	H	276	277	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	295	297	first strand
Strand 2	H	304	312	anti-parallel
Strand 3	J	304	312	anti-parallel
Strand 4	J	295	297	anti-parallel
Strand 5	H	295	297	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	33	first strand
Strand 2	J	17	26	anti-parallel
Strand 3	J	115	124	anti-parallel
Strand 4	J	127	134	anti-parallel
Strand 5	J	174	177	anti-parallel
Strand 6	J	180	183	anti-parallel
Strand 7	J	78	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0I