Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O0L entry

There are 10 chains in PDB entry 9O0L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 91	LYS 223
B	ASP 93	LYS 223
D	LYS 4	ARG 295
E	LYS 4	ARG 294
F	LYS 4	ARG 294
G	LYS 4	ARG 294
I	LYS 4	ARG 294
J	LYS 4	ARG 294
K	LYS 4	ARG 294
L	LYS 4	ARG 294

There are 90 helices in PDB entry 9O0L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	223	Right-handed alpha
Helix 2	AA2	B	94	222	Right-handed alpha
Helix 3	AA3	D	5	20	Right-handed alpha
Helix 4	AA4	D	24	40	Right-handed alpha
Helix 5	AA5	D	61	73	Right-handed alpha
Helix 6	AA6	D	92	107	Right-handed alpha
Helix 7	AA7	D	116	119	Right-handed 310
Helix 8	AA8	D	120	125	Right-handed alpha
Helix 9	AA9	D	128	138	Right-handed alpha
Helix 10	AB1	D	140	151	Right-handed alpha
Helix 11	AB2	D	176	181	Right-handed alpha
Helix 12	AB3	D	193	199	Right-handed alpha
Helix 13	AB4	D	221	233	Right-handed alpha
Helix 14	AB5	D	264	268	Right-handed 310
Helix 15	AB6	E	5	18	Right-handed alpha
Helix 16	AB7	E	24	42	Right-handed alpha
Helix 17	AB8	E	61	73	Right-handed alpha
Helix 18	AB9	E	92	107	Right-handed alpha
Helix 19	AC1	E	122	128	Right-handed alpha
Helix 20	AC2	E	128	138	Right-handed alpha
Helix 21	AC3	E	140	150	Right-handed alpha
Helix 22	AC4	E	176	183	Right-handed alpha
Helix 23	AC5	E	193	198	Right-handed alpha
Helix 24	AC6	E	221	233	Right-handed alpha
Helix 25	AC7	E	264	268	Right-handed 310
Helix 26	AC8	F	5	18	Right-handed alpha
Helix 27	AC9	F	24	41	Right-handed alpha
Helix 28	AD1	F	62	73	Right-handed alpha
Helix 29	AD2	F	93	107	Right-handed alpha
Helix 30	AD3	F	121	127	Right-handed alpha
Helix 31	AD4	F	128	137	Right-handed alpha
Helix 32	AD5	F	140	151	Right-handed alpha
Helix 33	AD6	F	176	181	Right-handed alpha
Helix 34	AD7	F	195	199	Right-handed 310
Helix 35	AD8	F	221	232	Right-handed alpha
Helix 36	AD9	F	264	268	Right-handed 310
Helix 37	AE1	G	5	18	Right-handed alpha
Helix 38	AE2	G	24	41	Right-handed alpha
Helix 39	AE3	G	61	73	Right-handed alpha
Helix 40	AE4	G	93	107	Right-handed alpha
Helix 41	AE5	G	120	125	Right-handed alpha
Helix 42	AE6	G	128	138	Right-handed alpha
Helix 43	AE7	G	140	151	Right-handed alpha
Helix 44	AE8	G	176	181	Right-handed alpha
Helix 45	AE9	G	195	200	Right-handed alpha
Helix 46	AF1	G	221	233	Right-handed alpha
Helix 47	AF2	G	264	268	Right-handed 310
Helix 48	AF3	I	5	19	Right-handed alpha
Helix 49	AF4	I	24	40	Right-handed alpha
Helix 50	AF5	I	61	73	Right-handed alpha
Helix 51	AF6	I	92	107	Right-handed alpha
Helix 52	AF7	I	120	127	Right-handed alpha
Helix 53	AF8	I	128	138	Right-handed alpha
Helix 54	AF9	I	140	151	Right-handed alpha
Helix 55	AG1	I	176	181	Right-handed alpha
Helix 56	AG2	I	193	198	Right-handed alpha
Helix 57	AG3	I	221	233	Right-handed alpha
Helix 58	AG4	I	264	268	Right-handed 310
Helix 59	AG5	J	5	19	Right-handed alpha
Helix 60	AG6	J	24	41	Right-handed alpha
Helix 61	AG7	J	61	73	Right-handed alpha
Helix 62	AG8	J	92	107	Right-handed alpha
Helix 63	AG9	J	120	127	Right-handed alpha
Helix 64	AH1	J	128	138	Right-handed alpha
Helix 65	AH2	J	141	151	Right-handed alpha
Helix 66	AH3	J	176	182	Right-handed alpha
Helix 67	AH4	J	193	200	Right-handed alpha
Helix 68	AH5	J	221	233	Right-handed alpha
Helix 69	AH6	J	264	268	Right-handed 310
Helix 70	AH7	K	5	19	Right-handed alpha
Helix 71	AH8	K	24	42	Right-handed alpha
Helix 72	AH9	K	61	73	Right-handed alpha
Helix 73	AI1	K	92	107	Right-handed alpha
Helix 74	AI2	K	122	128	Right-handed alpha
Helix 75	AI3	K	128	138	Right-handed alpha
Helix 76	AI4	K	141	151	Right-handed alpha
Helix 77	AI5	K	176	181	Right-handed alpha
Helix 78	AI6	K	193	200	Right-handed alpha
Helix 79	AI7	K	221	233	Right-handed alpha
Helix 80	AI8	K	264	268	Right-handed 310
Helix 81	AI9	L	5	19	Right-handed alpha
Helix 82	AJ1	L	24	41	Right-handed alpha
Helix 83	AJ2	L	61	73	Right-handed alpha
Helix 84	AJ3	L	92	107	Right-handed alpha
Helix 85	AJ4	L	128	138	Right-handed alpha
Helix 86	AJ5	L	140	151	Right-handed alpha
Helix 87	AJ6	L	176	181	Right-handed alpha
Helix 88	AJ7	L	193	198	Right-handed alpha
Helix 89	AJ8	L	221	233	Right-handed alpha
Helix 90	AJ9	L	264	268	Right-handed 310

There are 26 sheets in PDB entry 9O0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	156	159	parallel
Strand 3	D	163	165	anti-parallel
Strand 4	D	236	239	parallel
Strand 5	D	256	259	parallel
Strand 6	D	248	251	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	113	first strand
Strand 2	D	80	82	parallel
Strand 3	D	52	55	parallel
Strand 4	D	273	278	anti-parallel
Strand 5	D	284	289	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	218	220	parallel
Strand 3	D	210	211	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	156	159	parallel
Strand 3	E	163	165	anti-parallel
Strand 4	E	236	239	parallel
Strand 5	E	256	259	parallel
Strand 6	E	248	251	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	80	81	parallel
Strand 3	E	111	112	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	210	211	first strand
Strand 2	E	218	219	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	275	first strand
Strand 2	E	287	289	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	157	159	parallel
Strand 3	F	163	165	anti-parallel
Strand 4	F	237	239	parallel
Strand 5	F	256	258	parallel
Strand 6	F	249	251	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	113	first strand
Strand 2	F	80	82	parallel
Strand 3	F	52	55	parallel
Strand 4	F	273	278	anti-parallel
Strand 5	F	284	289	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	48	first strand
Strand 2	G	156	159	parallel
Strand 3	G	163	165	anti-parallel
Strand 4	G	237	239	parallel
Strand 5	G	256	258	parallel
Strand 6	G	249	251	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	113	first strand
Strand 2	G	80	82	parallel
Strand 3	G	52	54	parallel
Strand 4	G	273	278	anti-parallel
Strand 5	G	284	289	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	203	first strand
Strand 2	G	218	220	parallel
Strand 3	G	210	211	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	47	48	first strand
Strand 2	I	156	159	parallel
Strand 3	I	163	166	anti-parallel
Strand 4	I	236	239	parallel
Strand 5	I	256	259	parallel
Strand 6	I	248	251	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	111	113	first strand
Strand 2	I	80	82	parallel
Strand 3	I	52	55	parallel
Strand 4	I	275	278	anti-parallel
Strand 5	I	284	287	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	209	211	first strand
Strand 2	I	218	220	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	48	first strand
Strand 2	J	156	159	parallel
Strand 3	J	163	165	anti-parallel
Strand 4	J	236	239	parallel
Strand 5	J	256	258	parallel
Strand 6	J	249	251	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	111	113	first strand
Strand 2	J	80	82	parallel
Strand 3	J	52	54	parallel
Strand 4	J	273	278	anti-parallel
Strand 5	J	284	289	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	202	203	first strand
Strand 2	J	218	220	parallel
Strand 3	J	210	211	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	48	first strand
Strand 2	K	156	159	parallel
Strand 3	K	163	165	anti-parallel
Strand 4	K	236	239	parallel
Strand 5	K	256	258	parallel
Strand 6	K	249	251	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	80	81	first strand
Strand 2	K	111	112	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	202	203	first strand
Strand 2	K	218	220	parallel
Strand 3	K	210	211	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	277	first strand
Strand 2	K	285	289	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	156	159	parallel
Strand 3	L	163	166	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	111	113	first strand
Strand 2	L	80	82	parallel
Strand 3	L	53	54	parallel
Strand 4	L	273	277	anti-parallel
Strand 5	L	285	289	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	202	203	first strand
Strand 2	L	218	220	parallel
Strand 3	L	210	211	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	237	239	first strand
Strand 2	L	256	259	parallel
Strand 3	L	248	251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O0L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0L