Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9O0U entry

There are 8 chains in PDB entry 9O0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 339	SER 612
B	LEU 30	GLY 380
C	SER 339	PRO 614
D	GLU 31	GLY 380
E	SER 339	LEU 613
F	LEU 30	GLY 380
G	ASP 341	PRO 614
H	LEU 30	GLY 380

There are115 helices in PDB entry 9O0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	345	349	Right-handed 310
Helix 2	AA2	A	383	398	Right-handed alpha
Helix 3	AA3	A	428	435	Right-handed alpha
Helix 4	AA4	A	441	462	Right-handed alpha
Helix 5	AA5	A	478	480	Right-handed 310
Helix 6	AA6	A	489	494	Right-handed alpha
Helix 7	AA7	A	513	519	Right-handed alpha
Helix 8	AA8	A	526	544	Right-handed alpha
Helix 9	AA9	A	553	563	Right-handed alpha
Helix 10	AB1	A	569	573	Right-handed 310
Helix 11	AB2	A	578	590	Right-handed alpha
Helix 12	AB3	A	592	596	Right-handed 310
Helix 13	AB4	A	598	611	Right-handed alpha
Helix 14	AB5	B	31	38	Right-handed alpha
Helix 15	AB6	B	43	58	Right-handed alpha
Helix 16	AB7	B	64	66	Right-handed 310
Helix 17	AB8	B	104	116	Right-handed alpha
Helix 18	AB9	B	117	121	Right-handed 310
Helix 19	AC1	B	151	159	Right-handed alpha
Helix 20	AC2	B	162	184	Right-handed alpha
Helix 21	AC3	B	192	194	Right-handed 310
Helix 22	AC4	B	212	221	Right-handed alpha
Helix 23	AC5	B	231	236	Right-handed alpha
Helix 24	AC6	B	242	258	Right-handed alpha
Helix 25	AC7	B	267	272	Right-handed alpha
Helix 26	AC8	B	309	320	Right-handed alpha
Helix 27	AC9	B	331	342	Right-handed alpha
Helix 28	AD1	B	351	357	Right-handed alpha
Helix 29	AD2	B	358	367	Right-handed alpha
Helix 30	AD3	B	370	379	Right-handed alpha
Helix 31	AD4	C	345	349	Right-handed 310
Helix 32	AD5	C	383	398	Right-handed alpha
Helix 33	AD6	C	428	435	Right-handed alpha
Helix 34	AD7	C	441	462	Right-handed alpha
Helix 35	AD8	C	513	519	Right-handed alpha
Helix 36	AD9	C	526	544	Right-handed alpha
Helix 37	AE1	C	553	564	Right-handed alpha
Helix 38	AE2	C	569	573	Right-handed 310
Helix 39	AE3	C	578	590	Right-handed alpha
Helix 40	AE4	C	598	613	Right-handed alpha
Helix 41	AE5	D	32	38	Right-handed alpha
Helix 42	AE6	D	43	60	Right-handed alpha
Helix 43	AE7	D	64	66	Right-handed 310
Helix 44	AE8	D	104	116	Right-handed alpha
Helix 45	AE9	D	117	121	Right-handed 310
Helix 46	AF1	D	151	159	Right-handed alpha
Helix 47	AF2	D	162	184	Right-handed alpha
Helix 48	AF3	D	212	221	Right-handed alpha
Helix 49	AF4	D	231	236	Right-handed alpha
Helix 50	AF5	D	242	259	Right-handed alpha
Helix 51	AF6	D	267	272	Right-handed alpha
Helix 52	AF7	D	309	320	Right-handed alpha
Helix 53	AF8	D	331	342	Right-handed alpha
Helix 54	AF9	D	351	357	Right-handed alpha
Helix 55	AG1	D	358	367	Right-handed alpha
Helix 56	AG2	D	370	380	Right-handed alpha
Helix 57	AG3	E	345	349	Right-handed 310
Helix 58	AG4	E	383	398	Right-handed alpha
Helix 59	AG5	E	428	435	Right-handed alpha
Helix 60	AG6	E	441	462	Right-handed alpha
Helix 61	AG7	E	478	480	Right-handed 310
Helix 62	AG8	E	513	519	Right-handed alpha
Helix 63	AG9	E	526	544	Right-handed alpha
Helix 64	AH1	E	553	564	Right-handed alpha
Helix 65	AH2	E	569	573	Right-handed 310
Helix 66	AH3	E	578	590	Right-handed alpha
Helix 67	AH4	E	592	596	Right-handed 310
Helix 68	AH5	E	598	611	Right-handed alpha
Helix 69	AH6	F	31	40	Right-handed alpha
Helix 70	AH7	F	43	57	Right-handed alpha
Helix 71	AH8	F	64	66	Right-handed 310
Helix 72	AH9	F	104	115	Right-handed alpha
Helix 73	AI1	F	116	121	Right-handed 310
Helix 74	AI2	F	151	159	Right-handed alpha
Helix 75	AI3	F	162	184	Right-handed alpha
Helix 76	AI4	F	192	194	Right-handed 310
Helix 77	AI5	F	212	221	Right-handed alpha
Helix 78	AI6	F	231	236	Right-handed alpha
Helix 79	AI7	F	242	258	Right-handed alpha
Helix 80	AI8	F	267	273	Right-handed alpha
Helix 81	AI9	F	309	320	Right-handed alpha
Helix 82	AJ1	F	331	342	Right-handed alpha
Helix 83	AJ2	F	351	356	Right-handed alpha
Helix 84	AJ3	F	358	365	Right-handed alpha
Helix 85	AJ4	F	370	379	Right-handed alpha
Helix 86	AJ5	G	345	349	Right-handed 310
Helix 87	AJ6	G	383	398	Right-handed alpha
Helix 88	AJ7	G	428	435	Right-handed alpha
Helix 89	AJ8	G	441	462	Right-handed alpha
Helix 90	AJ9	G	478	480	Right-handed 310
Helix 91	AK1	G	513	519	Right-handed alpha
Helix 92	AK2	G	526	544	Right-handed alpha
Helix 93	AK3	G	553	564	Right-handed alpha
Helix 94	AK4	G	569	573	Right-handed 310
Helix 95	AK5	G	578	589	Right-handed alpha
Helix 96	AK6	G	592	596	Right-handed 310
Helix 97	AK7	G	598	612	Right-handed alpha
Helix 98	AK8	H	31	36	Right-handed alpha
Helix 99	AK9	H	43	57	Right-handed alpha
Helix 100	AL1	H	64	66	Right-handed 310
Helix 101	AL2	H	104	116	Right-handed alpha
Helix 102	AL3	H	117	121	Right-handed 310
Helix 103	AL4	H	151	159	Right-handed alpha
Helix 104	AL5	H	162	184	Right-handed alpha
Helix 105	AL6	H	192	194	Right-handed 310
Helix 106	AL7	H	212	221	Right-handed alpha
Helix 107	AL8	H	231	236	Right-handed alpha
Helix 108	AL9	H	241	259	Right-handed alpha
Helix 109	AM1	H	267	273	Right-handed alpha
Helix 110	AM2	H	309	320	Right-handed alpha
Helix 111	AM3	H	331	342	Right-handed alpha
Helix 112	AM4	H	345	349	Right-handed 310
Helix 113	AM5	H	351	357	Right-handed alpha
Helix 114	AM6	H	358	367	Right-handed alpha
Helix 115	AM7	H	370	380	Right-handed alpha

There are 17 sheets in PDB entry 9O0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	357	first strand
Strand 2	A	361	367	anti-parallel
Strand 3	A	371	377	anti-parallel
Strand 4	A	418	422	anti-parallel
Strand 5	A	408	412	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	477	first strand
Strand 2	A	481	484	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	75	first strand
Strand 2	B	82	87	anti-parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	138	144	anti-parallel
Strand 5	B	129	135	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	196	198	anti-parallel
Strand 3	B	204	206	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	357	first strand
Strand 2	C	361	367	anti-parallel
Strand 3	C	371	377	anti-parallel
Strand 4	C	418	422	anti-parallel
Strand 5	C	408	412	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	477	first strand
Strand 2	C	481	484	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	75	first strand
Strand 2	D	81	87	anti-parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	138	143	anti-parallel
Strand 5	D	129	134	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	196	198	anti-parallel
Strand 3	D	204	206	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	357	first strand
Strand 2	E	361	367	anti-parallel
Strand 3	E	371	377	anti-parallel
Strand 4	E	418	422	anti-parallel
Strand 5	E	408	412	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	474	477	first strand
Strand 2	E	481	484	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	75	first strand
Strand 2	F	81	87	anti-parallel
Strand 3	F	93	100	anti-parallel
Strand 4	F	138	144	anti-parallel
Strand 5	F	129	134	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	150	first strand
Strand 2	F	196	198	anti-parallel
Strand 3	F	204	206	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	357	first strand
Strand 2	G	362	367	anti-parallel
Strand 3	G	371	376	anti-parallel
Strand 4	G	418	422	anti-parallel
Strand 5	G	408	412	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	464	465	first strand
Strand 2	G	491	492	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	474	477	first strand
Strand 2	G	481	484	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	75	first strand
Strand 2	H	82	87	anti-parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	138	144	anti-parallel
Strand 5	H	129	135	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	150	first strand
Strand 2	H	196	198	anti-parallel
Strand 3	H	204	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9O0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9O0U