Analysis of interatomic Contacts of Structural Units in PDB entry:
9O1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O1J entry

There are 22 chains in PDB entry 9O1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 7GLN 512
B
ILE 9GLN 512
C
SER 7GLN 512
D
SER 8LYS 463
E
SER 8LYS 463
F
SER 8LYS 463
G
ALA 2VAL 286
H
ILE 3ARG 130
I
MET 1ILE 83
J
MET 1ILE 83
L
MET 1ILE 83
M
MET 1ILE 83
N
MET 1ILE 83
O
MET 1ILE 83
P
MET 1ILE 83
Q
MET 1ILE 83
R
MET 1ILE 83
S
MET 1ILE 83
W
ALA 2SER 178
X
MET 1GLU 155
Y
MET 1GLU 155
a
GLU 4HIS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are201 helices in PDB entry 9O1J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
101 105Right-handed 310
Helix 3
AA3
A
136 140Right-handed 310
Helix 4
AA4
A
151 158Right-handed alpha
Helix 5
AA5
A
175 186Right-handed alpha
Helix 6
AA6
A
187 189Right-handed 310
Helix 7
AA7
A
202 216Right-handed alpha
Helix 8
AA8
A
218 220Right-handed 310
Helix 9
AA9
A
232 253Right-handed alpha
Helix 10
AB1
A
263 278Right-handed alpha
Helix 11
AB2
A
283 287Right-handed 310
Helix 12
AB3
A
290 300Right-handed alpha
Helix 13
AB4
A
306 314Right-handed alpha
Helix 14
AB5
A
340 350Right-handed alpha
Helix 15
AB6
A
357 363Right-handed alpha
Helix 16
AB7
A
378 383Right-handed 310
Helix 17
AB8
A
384 404Right-handed alpha
Helix 18
AB9
A
405 411Right-handed 310
Helix 19
AC1
A
415 432Right-handed alpha
Helix 20
AC2
A
441 454Right-handed alpha
Helix 21
AC3
A
464 480Right-handed alpha
Helix 22
AC4
A
480 488Right-handed alpha
Helix 23
AC5
A
494 512Right-handed alpha
Helix 24
AC6
B
10 15Right-handed alpha
Helix 25
AC7
B
16 20Right-handed 310
Helix 26
AC8
B
101 105Right-handed 310
Helix 27
AC9
B
136 140Right-handed 310
Helix 28
AD1
B
151 158Right-handed alpha
Helix 29
AD2
B
175 186Right-handed alpha
Helix 30
AD3
B
202 216Right-handed alpha
Helix 31
AD4
B
232 252Right-handed alpha
Helix 32
AD5
B
263 278Right-handed alpha
Helix 33
AD6
B
290 300Right-handed alpha
Helix 34
AD7
B
306 314Right-handed alpha
Helix 35
AD8
B
340 348Right-handed alpha
Helix 36
AD9
B
357 363Right-handed alpha
Helix 37
AE1
B
378 383Right-handed 310
Helix 38
AE2
B
384 391Right-handed alpha
Helix 39
AE3
B
393 408Right-handed alpha
Helix 40
AE4
B
415 432Right-handed alpha
Helix 41
AE5
B
441 455Right-handed alpha
Helix 42
AE6
B
461 463Right-handed 310
Helix 43
AE7
B
464 480Right-handed alpha
Helix 44
AE8
B
480 489Right-handed alpha
Helix 45
AE9
B
494 512Right-handed alpha
Helix 46
AF1
C
57 59Right-handed 310
Helix 47
AF2
C
101 105Right-handed 310
Helix 48
AF3
C
136 140Right-handed 310
Helix 49
AF4
C
151 158Right-handed alpha
Helix 50
AF5
C
175 186Right-handed alpha
Helix 51
AF6
C
187 189Right-handed 310
Helix 52
AF7
C
202 216Right-handed alpha
Helix 53
AF8
C
218 220Right-handed 310
Helix 54
AF9
C
232 253Right-handed alpha
Helix 55
AG1
C
263 278Right-handed alpha
Helix 56
AG2
C
283 287Right-handed 310
Helix 57
AG3
C
290 300Right-handed alpha
Helix 58
AG4
C
306 314Right-handed alpha
Helix 59
AG5
C
340 348Right-handed alpha
Helix 60
AG6
C
357 363Right-handed alpha
Helix 61
AG7
C
384 391Right-handed alpha
Helix 62
AG8
C
391 403Right-handed alpha
Helix 63
AG9
C
407 411Right-handed 310
Helix 64
AH1
C
415 433Right-handed alpha
Helix 65
AH2
C
441 455Right-handed alpha
Helix 66
AH3
C
461 480Right-handed alpha
Helix 67
AH4
C
480 489Right-handed alpha
Helix 68
AH5
C
494 512Right-handed alpha
Helix 69
AH6
D
85 89Right-handed 310
Helix 70
AH7
D
120 124Right-handed 310
Helix 71
AH8
D
135 142Right-handed alpha
Helix 72
AH9
D
159 172Right-handed alpha
Helix 73
AI1
D
187 201Right-handed alpha
Helix 74
AI2
D
203 205Right-handed 310
Helix 75
AI3
D
217 238Right-handed alpha
Helix 76
AI4
D
249 261Right-handed alpha
Helix 77
AI5
D
268 272Right-handed 310
Helix 78
AI6
D
275 285Right-handed alpha
Helix 79
AI7
D
304 307Right-handed 310
Helix 80
AI8
D
310 317Right-handed alpha
Helix 81
AI9
D
318 320Right-handed 310
Helix 82
AJ1
D
327 332Right-handed alpha
Helix 83
AJ2
D
355 381Right-handed alpha
Helix 84
AJ3
D
388 405Right-handed alpha
Helix 85
AJ4
D
409 411Right-handed 310
Helix 86
AJ5
D
412 417Right-handed alpha
Helix 87
AJ6
D
424 438Right-handed alpha
Helix 88
AJ7
D
444 449Right-handed 310
Helix 89
AJ8
D
453 461Right-handed alpha
Helix 90
AJ9
E
85 89Right-handed 310
Helix 91
AK1
E
120 124Right-handed 310
Helix 92
AK2
E
135 142Right-handed alpha
Helix 93
AK3
E
159 172Right-handed alpha
Helix 94
AK4
E
187 201Right-handed alpha
Helix 95
AK5
E
203 205Right-handed 310
Helix 96
AK6
E
217 238Right-handed alpha
Helix 97
AK7
E
249 261Right-handed alpha
Helix 98
AK8
E
268 272Right-handed 310
Helix 99
AK9
E
275 287Right-handed alpha
Helix 100
AL1
E
304 307Right-handed 310
Helix 101
AL2
E
310 317Right-handed alpha
Helix 102
AL3
E
318 320Right-handed 310
Helix 103
AL4
E
327 333Right-handed alpha
Helix 104
AL5
E
350 355Right-handed alpha
Helix 105
AL6
E
355 383Right-handed alpha
Helix 106
AL7
E
384 387Right-handed 310
Helix 107
AL8
E
388 405Right-handed alpha
Helix 108
AL9
E
424 438Right-handed alpha
Helix 109
AM1
E
444 448Right-handed 310
Helix 110
AM2
E
453 461Right-handed alpha
Helix 111
AM3
F
85 89Right-handed 310
Helix 112
AM4
F
120 124Right-handed 310
Helix 113
AM5
F
135 142Right-handed alpha
Helix 114
AM6
F
159 175Right-handed alpha
Helix 115
AM7
F
187 201Right-handed alpha
Helix 116
AM8
F
203 205Right-handed 310
Helix 117
AM9
F
217 239Right-handed alpha
Helix 118
AN1
F
248 263Right-handed alpha
Helix 119
AN2
F
268 272Right-handed 310
Helix 120
AN3
F
275 285Right-handed alpha
Helix 121
AN4
F
303 307Right-handed 310
Helix 122
AN5
F
310 318Right-handed alpha
Helix 123
AN6
F
327 334Right-handed alpha
Helix 124
AN7
F
350 382Right-handed alpha
Helix 125
AN8
F
383 387Right-handed 310
Helix 126
AN9
F
388 405Right-handed alpha
Helix 127
AO1
F
412 417Right-handed alpha
Helix 128
AO2
F
424 438Right-handed alpha
Helix 129
AO3
F
444 449Right-handed 310
Helix 130
AO4
F
453 463Right-handed alpha
Helix 131
AO5
G
3 41Right-handed alpha
Helix 132
AO6
G
42 60Right-handed alpha
Helix 133
AO7
G
65 69Right-handed 310
Helix 134
AO8
G
90 110Right-handed alpha
Helix 135
AO9
G
119 128Right-handed alpha
Helix 136
AP1
G
145 162Right-handed alpha
Helix 137
AP2
G
210 284Right-handed alpha
Helix 138
AP3
H
87 103Right-handed alpha
Helix 139
AP4
H
115 130Right-handed alpha
Helix 140
AP5
I
2 41Right-handed alpha
Helix 141
AP6
I
44 76Right-handed alpha
Helix 142
AP7
I
79 83Right-handed 310
Helix 143
AP8
J
2 41Right-handed alpha
Helix 144
AP9
J
44 60Right-handed alpha
Helix 145
AQ1
J
61 76Right-handed alpha
Helix 146
AQ2
J
79 83Right-handed 310
Helix 147
AQ3
L
2 41Right-handed alpha
Helix 148
AQ4
L
44 76Right-handed alpha
Helix 149
AQ5
L
77 83Right-handed alpha
Helix 150
AQ6
M
2 41Right-handed alpha
Helix 151
AQ7
M
44 76Right-handed alpha
Helix 152
AQ8
M
79 83Right-handed 310
Helix 153
AQ9
N
2 41Right-handed alpha
Helix 154
AR1
N
44 60Right-handed alpha
Helix 155
AR2
N
60 74Right-handed alpha
Helix 156
AR3
N
79 83Right-handed 310
Helix 157
AR4
O
2 41Right-handed alpha
Helix 158
AR5
O
44 75Right-handed alpha
Helix 159
AR6
P
2 41Right-handed alpha
Helix 160
AR7
P
44 60Right-handed alpha
Helix 161
AR8
P
60 76Right-handed alpha
Helix 162
AR9
Q
2 41Right-handed alpha
Helix 163
AS1
Q
44 60Right-handed alpha
Helix 164
AS2
Q
60 76Right-handed alpha
Helix 165
AS3
Q
79 83Right-handed 310
Helix 166
AS4
R
2 41Right-handed alpha
Helix 167
AS5
R
44 60Right-handed alpha
Helix 168
AS6
R
60 76Right-handed alpha
Helix 169
AS7
S
2 41Right-handed alpha
Helix 170
AS8
S
44 76Right-handed alpha
Helix 171
AS9
S
79 83Right-handed 310
Helix 172
AT1
W
3 22Right-handed alpha
Helix 173
AT2
W
26 41Right-handed alpha
Helix 174
AT3
W
41 49Right-handed alpha
Helix 175
AT4
W
54 67Right-handed alpha
Helix 176
AT5
W
68 70Right-handed 310
Helix 177
AT6
W
71 84Right-handed alpha
Helix 178
AT7
W
86 88Right-handed 310
Helix 179
AT8
W
89 106Right-handed alpha
Helix 180
AT9
W
119 135Right-handed alpha
Helix 181
AU1
W
164 178Right-handed alpha
Helix 182
AU2
X
5 25Right-handed alpha
Helix 183
AU3
X
25 120Right-handed alpha
Helix 184
AU4
X
123 137Right-handed alpha
Helix 185
AU5
X
140 143Right-handed 310
Helix 186
AU6
X
144 149Right-handed alpha
Helix 187
AU7
X
150 155Right-handed 310
Helix 188
AU8
Y
2 24Right-handed alpha
Helix 189
AU9
Y
25 137Right-handed alpha
Helix 190
AV1
Y
141 153Right-handed alpha
Helix 191
AV2
a
5 14Right-handed alpha
Helix 192
AV3
a
32 39Right-handed alpha
Helix 193
AV4
a
46 69Right-handed alpha
Helix 194
AV5
a
76 97Right-handed alpha
Helix 195
AV6
a
103 121Right-handed alpha
Helix 196
AV7
a
127 138Right-handed alpha
Helix 197
AV8
a
147 150Right-handed 310
Helix 198
AV9
a
151 175Right-handed alpha
Helix 199
AW1
a
175 186Right-handed alpha
Helix 200
AW2
a
192 241Right-handed alpha
Helix 201
AW3
a
244 283Right-handed alpha
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There are 29 sheets in PDB entry 9O1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
137 140first strand
Strand 2
W
107 114parallel
Strand 3
W
152 156anti-parallel
Strand 4
W
159 162anti-parallel
Strand 5
A
26 36anti-parallel
Strand 6
W
143 144first strand
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
137 140first strand
Strand 2
W
107 114parallel
Strand 3
A
88 91first strand
Strand 4
A
53 56anti-parallel
Strand 5
A
60 67anti-parallel
Strand 6
A
72 76anti-parallel
Strand 7
A
39 44anti-parallel
Strand 8
A
26 36anti-parallel
Strand 9
W
143 144first strand
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 100first strand
Strand 2
A
126 129anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 110first strand
Strand 2
A
222 227parallel
Strand 3
A
193 199parallel
Strand 4
A
256 261parallel
Strand 5
A
324 332parallel
Strand 6
A
166 170parallel
Strand 7
A
352 355parallel
Strand 8
A
375 376anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 147first strand
Strand 2
A
160 161anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 35first strand
Strand 2
B
39 43anti-parallel
Strand 3
B
72 76anti-parallel
Strand 4
B
61 67anti-parallel
Strand 5
B
52 55anti-parallel
Strand 6
B
88 95anti-parallel
Strand 7
B
29 35anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 99first strand
Strand 2
B
127 129anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 110first strand
Strand 2
B
222 227parallel
Strand 3
B
193 199parallel
Strand 4
B
256 261parallel
Strand 5
B
323 332parallel
Strand 6
B
304 305anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 110first strand
Strand 2
B
222 227parallel
Strand 3
B
193 199parallel
Strand 4
B
256 261parallel
Strand 5
B
323 332parallel
Strand 6
B
167 170parallel
Strand 7
B
352 355parallel
Strand 8
B
375 376anti-parallel
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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
61 67first strand
Strand 2
C
52 55anti-parallel
Strand 3
C
88 95anti-parallel
Strand 4
C
29 36anti-parallel
Strand 5
C
39 43anti-parallel
Strand 6
C
72 76anti-parallel
Strand 7
C
61 67anti-parallel
Strand 8
E
9 16anti-parallel
Strand 9
E
72 79anti-parallel
Strand 10
E
34 38anti-parallel
Strand 11
E
44 52anti-parallel
Strand 12
E
55 60anti-parallel
Strand 13
E
19 23anti-parallel
Strand 14
E
9 16anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 100first strand
Strand 2
C
126 129anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
108 109first strand
Strand 2
C
222 228parallel
Strand 3
C
193 201parallel
Strand 4
C
256 261parallel
Strand 5
C
323 332parallel
Strand 6
C
304 305anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
108 109first strand
Strand 2
C
222 228parallel
Strand 3
C
193 201parallel
Strand 4
C
256 261parallel
Strand 5
C
323 332parallel
Strand 6
C
167 170parallel
Strand 7
C
352 355parallel
Strand 8
C
375 376anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
146 147first strand
Strand 2
C
160 161anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
9 16first strand
Strand 2
D
19 23anti-parallel
Strand 3
D
55 60anti-parallel
Strand 4
D
44 52anti-parallel
Strand 5
D
35 38anti-parallel
Strand 6
D
72 75anti-parallel
Strand 7
D
9 16anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
81 83first strand
Strand 2
D
111 113anti-parallel
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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
92 93first strand
Strand 2
D
207 212parallel
Strand 3
D
178 184parallel
Strand 4
D
241 246parallel
Strand 5
D
294 302parallel
Strand 6
D
149 154parallel
Strand 7
D
322 325parallel
Strand 8
D
345 346anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
130 131first strand
Strand 2
D
144 145anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
81 83first strand
Strand 2
E
111 113anti-parallel
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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
92 93first strand
Strand 2
E
207 212parallel
Strand 3
E
178 184parallel
Strand 4
E
241 246parallel
Strand 5
E
294 302parallel
Strand 6
E
149 154parallel
Strand 7
E
322 325parallel
Strand 8
E
345 346anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
130 131first strand
Strand 2
E
144 145anti-parallel
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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
9 16first strand
Strand 2
F
19 23anti-parallel
Strand 3
F
55 60anti-parallel
Strand 4
F
44 52anti-parallel
Strand 5
F
34 38anti-parallel
Strand 6
F
72 79anti-parallel
Strand 7
F
9 16anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
81 83first strand
Strand 2
F
111 113anti-parallel
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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
92 93first strand
Strand 2
F
207 213parallel
Strand 3
F
178 186parallel
Strand 4
F
241 246parallel
Strand 5
F
294 300parallel
Strand 6
F
149 153parallel
Strand 7
F
322 325parallel
Strand 8
F
345 346anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
135 137first strand
Strand 2
G
116 118parallel
Strand 3
G
79 81parallel
Strand 4
G
168 177parallel
Strand 5
G
180 189anti-parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
206 208first strand
Strand 2
H
42 45parallel
Strand 3
H
68 72anti-parallel
Strand 4
H
76 81anti-parallel
Strand 5
H
5 11parallel
Strand 6
H
15 17anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
206 208first strand
Strand 2
H
42 45parallel
Strand 3
H
68 72anti-parallel
Strand 4
H
76 81anti-parallel
Strand 5
H
5 11parallel
Strand 6
H
20 21anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
31 35first strand
Strand 2
H
23 28anti-parallel
Strand 3
H
49 54anti-parallel
Strand 4
H
60 65anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
18 19first strand
Strand 2
a
44 45anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il