Analysis of interatomic Contacts of Structural Units in PDB entry:
9O3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O3D entry

There are 4 chains in PDB entry 9O3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2LYS 214
B
ASP 1SER 210
C
ILE 414ASN 645
D
LEU 413ILE 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9O3D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
83 87Right-handed 310
Helix 2
AA2
A
156 158Right-handed 310
Helix 3
AA3
A
187 189Right-handed 310
Helix 4
AA4
A
201 204Right-handed 310
Helix 5
AA5
B
79 83Right-handed 310
Helix 6
AA6
B
123 129Right-handed alpha
Helix 7
AA7
B
185 191Right-handed alpha
Helix 8
AA8
C
421 425Right-handed 310
Helix 9
AA9
C
436 443Right-handed alpha
Helix 10
AB1
C
444 447Right-handed 310
Helix 11
AB2
C
451 456Right-handed alpha
Helix 12
AB3
C
461 465Right-handed 310
Helix 13
AB4
C
500 502Right-handed 310
Helix 14
AB5
C
593 598Right-handed alpha
Helix 15
AB6
C
613 618Right-handed alpha
Helix 16
AB7
C
619 622Right-handed 310
Helix 17
AB8
D
421 425Right-handed 310
Helix 18
AB9
D
436 443Right-handed alpha
Helix 19
AC1
D
444 447Right-handed 310
Helix 20
AC2
D
451 458Right-handed alpha
Helix 21
AC3
D
461 465Right-handed 310
Helix 22
AC4
D
593 598Right-handed alpha
Helix 23
AC5
D
613 618Right-handed alpha
Helix 24
AC6
D
619 622Right-handed 310
Helix 25
AC7
E
83 87Right-handed 310
Helix 26
AC8
E
156 158Right-handed 310
Helix 27
AC9
E
185 189Right-handed 310
Helix 28
AD1
F
79 83Right-handed 310
Helix 29
AD2
F
123 130Right-handed alpha
Helix 30
AD3
F
185 191Right-handed alpha
Helix 31
AD4
G
421 425Right-handed 310
Helix 32
AD5
G
436 443Right-handed alpha
Helix 33
AD6
G
452 458Right-handed alpha
Helix 34
AD7
G
461 465Right-handed 310
Helix 35
AD8
G
593 598Right-handed alpha
Helix 36
AD9
G
613 618Right-handed alpha
Helix 37
AE1
G
619 622Right-handed 310
Helix 38
AE2
H
52 55Right-handed 310
Helix 39
AE3
H
83 87Right-handed 310
Helix 40
AE4
H
187 189Right-handed 310
Helix 41
AE5
I
52 55Right-handed 310
Helix 42
AE6
I
187 192Right-handed 310
Helix 43
AE7
I
200 204Right-handed 310
Helix 44
AE8
J
79 83Right-handed 310
Helix 45
AE9
J
123 129Right-handed alpha
Helix 46
AF1
J
184 189Right-handed alpha
Helix 47
AF2
K
421 425Right-handed 310
Helix 48
AF3
K
436 443Right-handed alpha
Helix 49
AF4
K
444 447Right-handed 310
Helix 50
AF5
K
451 458Right-handed alpha
Helix 51
AF6
K
461 465Right-handed 310
Helix 52
AF7
K
500 502Right-handed 310
Helix 53
AF8
K
593 598Right-handed alpha
Helix 54
AF9
K
613 618Right-handed alpha
Helix 55
AG1
K
619 622Right-handed 310
Helix 56
AG2
L
79 83Right-handed 310
Helix 57
AG3
L
123 128Right-handed alpha
Helix 58
AG4
L
185 191Right-handed alpha
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There are 60 sheets in PDB entry 9O3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 6first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
107 111parallel
Strand 3
A
88 100anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
45 52anti-parallel
Strand 6
A
56 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
107 111parallel
Strand 3
A
88 100anti-parallel
Strand 4
A
100 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 124first strand
Strand 2
A
135 145anti-parallel
Strand 3
A
176 185anti-parallel
Strand 4
A
163 165anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 124first strand
Strand 2
A
135 145anti-parallel
Strand 3
A
176 185anti-parallel
Strand 4
A
169 170anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 154first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
205 207anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
104 108parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
104 108parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
98 100anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 119first strand
Strand 2
B
131 141anti-parallel
Strand 3
B
175 184anti-parallel
Strand 4
B
161 165anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
155 156first strand
Strand 2
B
146 152anti-parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
207 209anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
468 474first strand
Strand 2
C
569 573anti-parallel
Strand 3
C
578 581anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
496 498first strand
Strand 2
C
536 538anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
513 516first strand
Strand 2
C
506 509anti-parallel
Strand 3
C
551 555anti-parallel
Strand 4
C
561 565anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
602 604first strand
Strand 2
C
607 609anti-parallel
Strand 3
C
637 644anti-parallel
Strand 4
C
625 632anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
414 415first strand
Strand 2
D
514 516anti-parallel
Strand 3
D
502 508anti-parallel
Strand 4
D
551 556anti-parallel
Strand 5
D
561 565anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
468 474first strand
Strand 2
D
569 573anti-parallel
Strand 3
D
578 581anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
496 498first strand
Strand 2
D
536 538anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
602 604first strand
Strand 2
D
607 609anti-parallel
Strand 3
D
636 644anti-parallel
Strand 4
D
625 633anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4 6first strand
Strand 2
E
18 24anti-parallel
Strand 3
E
77 82anti-parallel
Strand 4
E
67 72anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 12first strand
Strand 2
E
107 111parallel
Strand 3
E
88 100anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 52anti-parallel
Strand 6
E
56 59anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 12first strand
Strand 2
E
107 111parallel
Strand 3
E
88 100anti-parallel
Strand 4
E
100 103anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
120 124first strand
Strand 2
E
136 145anti-parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
169 170anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
151 154first strand
Strand 2
E
194 199anti-parallel
Strand 3
E
207 211anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
4 6first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
70 75anti-parallel
Strand 4
F
62 67anti-parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 14first strand
Strand 2
F
104 109parallel
Strand 3
F
85 92anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
45 49anti-parallel
Strand 6
F
53 54anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 14first strand
Strand 2
F
104 109parallel
Strand 3
F
85 92anti-parallel
Strand 4
F
97 100anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
116 120first strand
Strand 2
F
131 141anti-parallel
Strand 3
F
175 184anti-parallel
Strand 4
F
161 165anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
155 156first strand
Strand 2
F
147 152anti-parallel
Strand 3
F
193 199anti-parallel
Strand 4
F
207 212anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
426 427first strand
Strand 2
G
503 509anti-parallel
Strand 3
G
513 516anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
426 427first strand
Strand 2
G
503 509anti-parallel
Strand 3
G
551 555anti-parallel
Strand 4
G
561 565anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
473 474first strand
Strand 2
G
569 572anti-parallel
Strand 3
G
578 581anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
496 498first strand
Strand 2
G
536 538anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
602 604first strand
Strand 2
G
607 609anti-parallel
Strand 3
G
636 644anti-parallel
Strand 4
G
625 633anti-parallel
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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 100anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 100anti-parallel
Strand 4
H
100 103anti-parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
18 23first strand
Strand 2
H
77 82anti-parallel
Strand 3
H
67 72anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 121first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
163 165anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 121first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
151 154first strand
Strand 2
H
195 200anti-parallel
Strand 3
H
205 210anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 6first strand
Strand 2
I
18 24anti-parallel
Strand 3
I
77 82anti-parallel
Strand 4
I
67 72anti-parallel
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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
10 12first strand
Strand 2
I
107 111parallel
Strand 3
I
88 100anti-parallel
Strand 4
I
33 39anti-parallel
Strand 5
I
46 52anti-parallel
Strand 6
I
56 59anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
10 12first strand
Strand 2
I
107 111parallel
Strand 3
I
88 100anti-parallel
Strand 4
I
100 103anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
120 124first strand
Strand 2
I
135 145anti-parallel
Strand 3
I
176 185anti-parallel
Strand 4
I
164 165anti-parallel
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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
120 124first strand
Strand 2
I
135 145anti-parallel
Strand 3
I
176 185anti-parallel
Strand 4
I
169 170anti-parallel
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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
153 154first strand
Strand 2
I
195 197anti-parallel
Strand 3
I
208 210anti-parallel
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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
4 7first strand
Strand 2
J
19 25anti-parallel
Strand 3
J
70 75anti-parallel
Strand 4
J
62 67anti-parallel
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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
10 14first strand
Strand 2
J
104 109parallel
Strand 3
J
84 92anti-parallel
Strand 4
J
33 38anti-parallel
Strand 5
J
45 49anti-parallel
Strand 6
J
53 54anti-parallel
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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
10 14first strand
Strand 2
J
104 109parallel
Strand 3
J
84 92anti-parallel
Strand 4
J
97 100anti-parallel
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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
116 120first strand
Strand 2
J
133 141anti-parallel
Strand 3
J
175 182anti-parallel
Strand 4
J
161 165anti-parallel
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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
155 156first strand
Strand 2
J
147 152anti-parallel
Strand 3
J
193 199anti-parallel
Strand 4
J
207 212anti-parallel
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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
473 474first strand
Strand 2
K
569 570anti-parallel
Strand 3
K
580 581anti-parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
496 498first strand
Strand 2
K
536 538anti-parallel
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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
513 516first strand
Strand 2
K
503 509anti-parallel
Strand 3
K
551 555anti-parallel
Strand 4
K
561 565anti-parallel
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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
607 609first strand
Strand 2
K
636 644anti-parallel
Strand 3
K
625 633anti-parallel
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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 14first strand
Strand 2
L
104 109parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 14first strand
Strand 2
L
104 109parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
97 100anti-parallel
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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
116 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
161 166anti-parallel
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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
155 156first strand
Strand 2
L
146 152anti-parallel
Strand 3
L
195 200anti-parallel
Strand 4
L
207 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il