Analysis of interatomic Contacts of Structural Units in PDB entry:
9O3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9O3Q entry

There is 1 chain in PDB entry 9O3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12ARG 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9O3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
38 57Right-handed alpha
Helix 4
AA4
A
71 93Right-handed alpha
Helix 5
AA5
A
94 110Right-handed alpha
Helix 6
AA6
A
115 118Right-handed 310
Helix 7
AA7
A
119 136Right-handed alpha
Helix 8
AA8
A
137 140Right-handed 310
Helix 9
AA9
A
141 156Right-handed alpha
Helix 10
AB1
A
156 167Right-handed alpha
Helix 11
AB2
A
177 194Right-handed alpha
Helix 12
AB3
A
198 213Right-handed alpha
Helix 13
AB4
A
213 218Right-handed alpha
Helix 14
AB5
A
219 221Right-handed 310
Helix 15
AB6
A
229 251Right-handed alpha
Helix 16
AB7
A
256 260Right-handed 310
Helix 17
AB8
A
262 273Right-handed alpha
Helix 18
AB9
A
294 303Right-handed alpha
Helix 19
AC1
A
305 323Right-handed alpha
Helix 20
AC2
A
329 334Right-handed 310
Helix 21
AC3
A
425 438Right-handed 310
Helix 22
AC4
A
473 477Right-handed 310
Helix 23
AC5
A
575 577Right-handed 310
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There are 3 sheets in PDB entry 9O3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
361 365anti-parallel
Strand 3
A
375 379anti-parallel
Strand 4
A
395 399anti-parallel
Strand 5
A
402 403anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 443first strand
Strand 2
A
510 516anti-parallel
Strand 3
A
567 573anti-parallel
Strand 4
A
548 552anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 460first strand
Strand 2
A
467 471anti-parallel
Strand 3
A
480 491anti-parallel
Strand 4
A
494 503anti-parallel
Strand 5
A
579 587anti-parallel
Strand 6
A
534 542anti-parallel
Strand 7
A
526 531anti-parallel
Strand 8
A
519 523anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il